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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "TRANSPORT PROTEIN"

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Search Summary

This query matches 6,573 Structures.

Refinements

Structure Determination Methodology

experimental (6,573)

Scientific Name of Source Organism

	Homo sapiens (2,116)
	Mus musculus (501)
	Rattus norvegicus (423)
	Escherichia coli K-12 (289)
	Escherichia coli (246)
	Bos taurus (167)
	Saccharomyces cerevisiae (119)
	Arabidopsis thaliana (113)
	Oryctolagus cuniculus (113)
	synthetic construct (92)

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Taxonomy

	Eukaryota (4,124)
	Bacteria (2,462)
	Archaea (169)
	other sequences (94)
	Riboviria (45)
	Eukaryota (eukaryotes) (27)
	Monodnaviria (20)
	Duplodnaviria (12)
	unclassified sequences (2)
	Riboviria (RNA viruses and viroids) (1)

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Experimental Method

	X-RAY DIFFRACTION (4,585)
	ELECTRON MICROSCOPY (1,756)
	SOLUTION NMR (210)
	ELECTRON CRYSTALLOGRAPHY (14)
	NEUTRON DIFFRACTION (7)
	SOLID-STATE NMR (6)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (6,573)
	DNA (12)
	RNA (4)

Refinement Resolution (Å)

	0.5 - 1.0 (13)
	1.0 - 1.5 (459)
	1.5 - 2.0 (1,312)
	2.0 - 2.5 (1,274)
	2.5 - 3.0 (1,137)
	3.0 - 3.5 (1,122)
	3.5 - 4.0 (622)
	4.0 - 4.5 (191)
	> 4.5 (227)

Release Date

	1980 - 1984 (4)
	1985 - 1989 (5)
	1990 - 1994 (11)
	1995 - 1999 (33)
	2000 - 2004 (291)
	2005 - 2009 (759)
	2010 - 2014 (1,498)
	2015 - 2019 (1,682)
	2020 - 2024 (2,110)
	2025 - 2029 (180)

Enzyme Classification Name

	Translocases (299)
	Hydrolases (331)
	Oxidoreductases (159)
	Isomerases (97)
	Transferases (80)
	Ligases (3)
	Lyases (2)

Membrane Protein Annotation

	PDBTM (2,474)
	MemProtMD (1,880)
	mpstruc (1,608)
	OPM (1,298)

Symmetry Type

	Asymmetric (3,781)
	Cyclic (2,576)
	Dihedral (426)
	Octahedral (21)
	Helical (16)
	Tetrahedral (2)

SCOP Classification

	All beta proteins (856)
	Alpha and beta proteins (a/b) (843)
	All alpha proteins (486)
	Artifacts (414)
	Membrane and cell surface proteins and peptides (286)
	Alpha and beta proteins (a+b) (184)
	Coiled coil proteins (11)
	Small proteins (23)
	Multi-domain proteins (alpha and beta) (20)
	Peptides (10)

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1 to 25 of 6,573 Structures

Page 1 of 263

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3K8P \| pdb_00003k8p	Download File View File

Structural basis for vesicle tethering by the Dsl1 complex

Ren, Y., Jeffrey, P.D., Hughson, F.M.

(2009) Cell 139: 1119-1129

Released	2009-11-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Kluyveromyces lactis Saccharomyces cerevisiae
Macromolecule	Dsl1 (protein) Protein transport protein SEC39 (protein)

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1B0U \| pdb_00001b0u	Download File View File

ATP-BINDING SUBUNIT OF THE HISTIDINE PERMEASE FROM SALMONELLA TYPHIMURIUM

Hung, L.-W., Wang, I.X., Nikaido, K., Liu, P.-Q., Ames, G.F.-L., Kim, S.-H.

(1998) Nature 396: 703-707

Released	1999-11-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	HISTIDINE PERMEASE (protein)
Unique Ligands	ATP, CL

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1B2V \| pdb_00001b2v	Download File View File

HEME-BINDING PROTEIN A

Arnoux, P., Haser, R., Izadi, N., Lecroisey, A., Wandersma, N.C., Czjzek, M.

(1999) Nat Struct Biol 6: 516-520

Released	1999-06-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Serratia marcescens
Macromolecule	PROTEIN (HEME-BINDING PROTEIN A) (protein)
Unique Ligands	CA, HEM

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1B8E \| pdb_00001b8e	Download File View File

HIGH RESOLUTION CRYSTAL STRUCTURE OF THE BOVINE BETA-LACTOGLOBULIN (ISOFORMS A AND B) IN ORTHOROMBIC SPACE GROUP

Oliveira, K.M.G., Sawyer, L., Polikarpov, I.

(2001) Eur J Biochem 268: 477-483

Released	2001-05-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (BETA-LACTOGLOBULIN) (protein)

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1BSO \| pdb_00001bso	Download File View File

12-BROMODODECANOIC ACID BINDS INSIDE THE CALYX OF BOVINE BETA-LACTOGLOBULIN

Qin, B.Y., Creamer, L.K., Baker, E.N., Jameson, G.B.

(1998) FEBS Lett 438: 272-278

Released	1999-09-02
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (BOVINE BETA-LACTOGLOBULIN A) (protein)
Unique Ligands	BRC

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1BY1 \| pdb_00001by1	Download File View File

DBL homology domain from beta-PIX

Aghazadeh, B., Zhu, K., Kubiseski, T.J., Liu, G.A., Pawson, T., Zheng, Y., Rosen, M.K.

(1998) Nat Struct Biol 5: 1098-1107

Released	1999-10-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (PIX) (protein)

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1BYU \| pdb_00001byu	Download File View File

CANINE GDP-RAN

Stewart, M., Kent, H.M., Mccoy, A.J.

(1998) J Mol Biology 284: 1517-1527

Released	1998-12-02
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Canis lupus familiaris
Macromolecule	PROTEIN (GTP-BINDING PROTEIN RAN) (protein)
Unique Ligands	GDP, MG

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1BZK \| pdb_00001bzk	Download File View File

STRUCTURAL STUDIES ON THE EFFECTS OF THE DELETION IN THE RED CELL ANION EXCHANGER (BAND3, AE1) ASSOCIATED WITH SOUTH EAST ASIAN OVALOCYTOSIS.

Chambers, E.J., Bloomberg, G.B., Ring, S.M., Tanner, M.J.A.

(1999) J Mol Biology 285: 1289-1307

Released	1999-06-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (BAND 3 ANION TRANSPORT PROTEIN) (protein)

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1C5K \| pdb_00001c5k	Download File View File

THE STRUCTURE OF TOLB, AN ESSENTIAL COMPONENT OF THE TOL-DEPENDENT TRANSLOCATION SYSTEM AND ITS INTERACTIONS WITH THE TRANSLOCATION DOMAIN OF COLICIN E9

Carr, S., Penfold, C.N., Bamford, V., James, R., Hemmings, A.M.

(2000) Structure 8: 57-66

Released	2000-12-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (TOLB PROTEIN) (protein)
Unique Ligands	YB

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1CJ5 \| pdb_00001cj5	Download File View File

BOVINE BETA-LACTOGLOBULIN A

Kuwata, K., Hoshino, M., Forge, V., Era, S., Batt, C.A., Goto, Y.

(1999) Protein Sci 8: 2541-2545

Released	2000-04-26
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	BETA-LACTOGLOBULIN A (protein)

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1D2S \| pdb_00001d2s	Download File View File

CRYSTAL STRUCTURE OF THE N-TERMINAL LAMININ G-LIKE DOMAIN OF SHBG IN COMPLEX WITH DIHYDROTESTOSTERONE

Grishkovskaya, I., Avvakumov, G.V., Sklenar, G., Dales, D., Hammond, G.L., Muller, Y.A.

(2000) EMBO J 19: 504-512

Released	2000-06-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	SEX HORMONE-BINDING GLOBULIN (protein)
Unique Ligands	CA, DHT

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1D2U \| pdb_00001d2u	Download File View File

1.15 A CRYSTAL STRUCTURE OF NITROPHORIN 4 FROM RHODNIUS PROLIXUS

Weichsel, A., Andersen, J.F., Roberts, S.A., Montfort, W.R.

(2001) Biochemistry 40: 11327-11337

Released	2001-10-03
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Rhodnius prolixus
Macromolecule	NITROPHORIN 4 (protein)
Unique Ligands	HEM, NH3

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1D3S \| pdb_00001d3s	Download File View File

1.4 A crystal structure of nitrophorin 4 from Rhodnius prolixis at pH=5.6.

Weichsel, A., Andersen, J.F., Roberts, S.A., Montfort, W.R.

(2000) Nat Struct Biol 7: 551-554

Released	2000-07-07
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Rhodnius prolixus
Macromolecule	NITROPHORIN 4 (protein)
Unique Ligands	HEM

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1DF3 \| pdb_00001df3	Download File View File

SOLUTION STRUCTURE OF A RECOMBINANT MOUSE MAJOR URINARY PROTEIN

Luecke, C., Franzoni, L., Abbate, F., Loehr, F., Ferrari, E., Sorbi, R.T., Rueterjans, H., Spisni, A.

(1999) Eur J Biochem 266: 1210-1218

Released	2000-05-10
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	MAJOR URINARY PROTEIN (protein)

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1DK0 \| pdb_00001dk0	Download File View File

CRYSTAL STRUCTURE OF THE HEMOPHORE HASA FROM SERRATIA MARCESCENS CRYSTAL FORM P2(1), PH8

Arnoux, P., Haser, R., Izadi-Pruneyre, N., Lecroisey, A., Czjzek, M.

(2000) Proteins 41: 202-210

Released	2000-12-27
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Serratia marcescens
Macromolecule	HEME-BINDING PROTEIN A (protein)
Unique Ligands	HEM

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1DKH \| pdb_00001dkh	Download File View File

CRYSTAL STRUCTURE OF THE HEMOPHORE HASA, PH 6.5

Arnoux, P., Haser, R., Izadi-Pruneyre, N., Lecroisey, A., Czjzek, M.

(2000) Proteins 41: 202-210

Released	2000-12-27
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Serratia marcescens
Macromolecule	HEME-BINDING PROTEIN A (protein)
Unique Ligands	HEM, SM, ZN

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1DQE \| pdb_00001dqe	Download File View File

BOMBYX MORI PHEROMONE BINDING PROTEIN

Sandler, B.H., Nikonova, L., Leal, W.S., Clardy, J.

(2000) Chem Biol 7: 143-151

Released	2001-01-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bombyx mori
Macromolecule	PHEROMONE-BINDING PROTEIN (protein)
Unique Ligands	BOM

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1DV5 \| pdb_00001dv5	Download File View File

TERTIARY STRUCTURE OF APO-D-ALANYL CARRIER PROTEIN

Volkman, B.F., Zhang, Q., Debabov, D.V., Rivera, E., Kresheck, G.C., Neuhaus, F.C.

(2001) Biochemistry 40: 7964-7972

Released	2001-08-01
Method	SOLUTION NMR
Organisms	Lacticaseibacillus casei
Macromolecule	APO-D-ALANYL CARRIER PROTEIN (protein)

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1DV9 \| pdb_00001dv9	Download File View File

STRUCTURAL CHANGES ACCOMPANYING PH-INDUCED DISSOCIATION OF THE B-LACTOGLOBULIN DIMER

Uhrinova, S., Smith, M.H., Jameson, G.B., Uhrin, D., Sawyer, L., Barlow, P.N.

(2000) Biochemistry 39: 3565-3574

Released	2000-02-09
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	BETA-LACTOGLOBULIN (protein)

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1DZP \| pdb_00001dzp	Download File View File

Porcine Odorant Binding Protein Complexed with diphenylmethanone

Vincent, F., Spinelli, S., Cambillau, C., Tegoni, M.

(2000) J Mol Biology 300: 127

Released	2000-12-06
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Sus scrofa
Macromolecule	ODORANT-BINDING PROTEIN (protein)
Unique Ligands	BZQ

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1E12 \| pdb_00001e12	Download File View File

Halorhodopsin, a light-driven chloride pump

Essen, L.-O., Kolbe, M., Oesterhelt, D.

(2000) Science 288: 1390

Released	2000-06-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Halobacterium salinarum
Macromolecule	HALORHODOPSIN (protein)
Unique Ligands	CL, K, OLC, PLM, RET

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1E4H \| pdb_00001e4h	Download File View File

Structure of human transthyretin complexed with bromophenols: a new mode of binding

Ghosh, M., Meerts, I.A.T.M., Cook, A., Bergman, A., Brouwer, A., Johnson, L.N.

(2000) Acta Crystallogr D Biol Crystallogr 56: 1085

Released	2000-08-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	TRANSTHYRETIN (protein)
Unique Ligands	GOL, PBR

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1E7G \| pdb_00001e7g	Download File View File

Human serum albumin complexed with tetradecanoic acid (myristic acid)

Bhattacharya, A.A., Gruene, T., Curry, S.

(2000) J Mol Biology 303: 721

Released	2000-11-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	SERUM ALBUMIN (protein)
Unique Ligands	MYR

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1EE4 \| pdb_00001ee4	Download File View File

CRYSTAL STRUCTURE OF YEAST KARYOPHERIN (IMPORTIN) ALPHA IN A COMPLEX WITH A C-MYC NLS PEPTIDE

Conti, E.

(2000) Structure 8: 329-338

Released	2000-03-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	KARYOPHERIN ALPHA (protein) MYC PROTO-ONCOGENE PROTEIN (protein)

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1EE5 \| pdb_00001ee5	Download File View File

YEAST KARYOPHERIN (IMPORTIN) ALPHA IN A COMPLEX WITH A NUCLEOPLASMIN NLS PEPTIDE

Conti, E.

(2000) Structure 8: 329-338

Released	2000-03-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae Xenopus laevis
Macromolecule	KARYOPHERIN ALPHA (protein) NUCLEOPLASMIN (protein)

1 to 25 of 6,573 Structures

Page 1 of 263

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3K8P | pdb_00003k8p

1B0U | pdb_00001b0u

1B2V | pdb_00001b2v

1B8E | pdb_00001b8e

1BSO | pdb_00001bso

1BY1 | pdb_00001by1

1BYU | pdb_00001byu

1BZK | pdb_00001bzk

1C5K | pdb_00001c5k

1CJ5 | pdb_00001cj5

1D2S | pdb_00001d2s

1D2U | pdb_00001d2u

1D3S | pdb_00001d3s

1DF3 | pdb_00001df3

1DK0 | pdb_00001dk0

1DKH | pdb_00001dkh

1DQE | pdb_00001dqe

1DV5 | pdb_00001dv5

1DV9 | pdb_00001dv9

1DZP | pdb_00001dzp

1E12 | pdb_00001e12

1E4H | pdb_00001e4h

1E7G | pdb_00001e7g

1EE4 | pdb_00001ee4

1EE5 | pdb_00001ee5