RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Space Group = "P 63 2 2"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 979 Structures.

Refinements

Structure Determination Methodology

experimental (979)

Scientific Name of Source Organism

	Homo sapiens (141)
	Escherichia coli (45)
	Sporosarcina pasteurii (34)
	synthetic construct (29)
	Enterococcus faecium (24)
	Thermoactinomyces vulgaris (24)
	Mus musculus (21)
	Saccharomyces cerevisiae (20)
	Escherichia coli K-12 (16)
	Bacillus subtilis (14)

More...

Taxonomy

	Bacteria (505)
	Eukaryota (349)
	Riboviria (53)
	Archaea (51)
	other sequences (29)
	Duplodnaviria (12)
	Monodnaviria (7)
	Eukaryota (eukaryotes) (2)
	Varidnaviria (2)
	Viruses incertae sedis (2)

More...

Experimental Method

X-RAY DIFFRACTION (979)

Polymer Entity Type

	Protein (949)
	RNA (28)
	DNA (23)
	NA-hybrid (1)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (45)
	1.5 - 2.0 (268)
	2.0 - 2.5 (306)
	2.5 - 3.0 (241)
	3.0 - 3.5 (84)
	3.5 - 4.0 (24)
	4.0 - 4.5 (6)
	> 4.5 (3)

Release Date

	1990 - 1994 (14)
	1995 - 1999 (42)
	2000 - 2004 (101)
	2005 - 2009 (154)
	2010 - 2014 (230)
	2015 - 2019 (215)
	2020 - 2024 (220)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (226)
	Transferases (161)
	Oxidoreductases (60)
	Lyases (26)
	Isomerases (13)
	Ligases (14)

Membrane Protein Annotation

	OPM (20)
	PDBTM (19)
	mpstruc (18)
	MemProtMD (14)

Symmetry Type

	Cyclic (413)
	Asymmetric (344)
	Dihedral (285)
	Icosahedral (15)
	Octahedral (7)
	Tetrahedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (210)
	All beta proteins (135)
	Alpha and beta proteins (a+b) (136)
	Artifacts (74)
	All alpha proteins (51)
	Small proteins (7)
	Membrane and cell surface proteins and peptides (7)
	Low resolution protein structures (2)
	Coiled coil proteins (4)

AllSelected

1 to 25 of 979 Structures

Page 1 of 40

Sort by

Explore in 3D

1A6R \| pdb_00001a6r	Download File View File

GAL6 (YEAST BLEOMYCIN HYDROLASE) MUTANT C73A

Joshua-Tor, L., Zheng, W., Johnston, S.A.

(1998) Cell 93: 103-109

Released	1998-10-21
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	GAL6 (protein)
Unique Ligands	SO4

Explore in 3D

1ALL \| pdb_00001all	Download File View File

ALLOPHYCOCYANIN

Brejc, K., Ficner, R., Huber, R., Steinbacher, S.

(1995) J Mol Biology 249: 424-440

Released	1996-07-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Arthrospira platensis
Macromolecule	ALLOPHYCOCYANIN (protein)
Unique Ligands	CYC

Explore in 3D

1AW9 \| pdb_00001aw9	Download File View File

STRUCTURE OF GLUTATHIONE S-TRANSFERASE III IN APO FORM

Neuefeind, T., Huber, R., Reinemer, P., Knaeblein, J.

(1997) J Mol Biology 274: 577-587

Released	1998-10-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Zea mays
Macromolecule	GLUTATHIONE S-TRANSFERASE III (protein)
Unique Ligands	CD

Explore in 3D

1BLL \| pdb_00001bll	Download File View File

X-RAY CRYSTALLOGRAPHIC DETERMINATION OF THE STRUCTURE OF BOVINE LENS LEUCINE AMINOPEPTIDASE COMPLEXED WITH AMASTATIN: FORMULATION OF A CATALYTIC MECHANISM FEATURING A GEM-DIOLATE TRANSITION STATE

Kim, H., Lipscomb, W.N.

(1993) Biochemistry 32: 8465-8478

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus
Macromolecule	AMASTATIN (protein) LEUCINE AMINOPEPTIDASE (protein)
Unique Ligands	ZN

Explore in 3D

1BPM \| pdb_00001bpm	Download File View File

DIFFERENTIATION AND IDENTIFICATION OF THE TWO CATALYTIC METAL BINDING SITES IN BOVINE LENS LEUCINE AMINOPEPTIDASE BY X-RAY CRYSTALLOGRAPHY

Kim, H., Lipscomb, W.N.

(1993) Proc Natl Acad Sci U S A 90: 5006-5010

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bos taurus
Macromolecule	LEUCINE AMINOPEPTIDASE (protein)
Unique Ligands	MG, ZN

Explore in 3D

1BPN \| pdb_00001bpn	Download File View File

DIFFERENTIATION AND IDENTIFICATION OF THE TWO CATALYTIC METAL BINDING SITES IN BOVINE LENS LEUCINE AMINOPEPTIDASE BY X-RAY CRYSTALLOGRAPHY

Kim, H., Lipscomb, W.N.

(1993) Proc Natl Acad Sci U S A 90: 5006-5010

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bos taurus
Macromolecule	LEUCINE AMINOPEPTIDASE (protein)
Unique Ligands	ZN

Explore in 3D

1BZ5 \| pdb_00001bz5	Download File View File

EVIDENCE OF A COMMON DECAMER IN THREE CRYSTAL STRUCTURES OF BPTI, CRYSTALLIZE FROM THIOCYANATE, CHLORIDE OR SULFATE

Hamiaux, C., Prange, T., Ries-Kautt, M., Ducruix, A., Lafont, S., Astier, J.P., Veesler, S.

(2000) J Mol Biology 297: 697-712

Released	1998-11-11
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Bos taurus
Macromolecule	PANCREATIC TRYPSIN INHIBITOR (protein)
Unique Ligands	SO4

Explore in 3D

1CD5 \| pdb_00001cd5	Download File View File

GLUCOSAMINE-6-PHOSPHATE DEAMINASE FROM E.COLI, T CONFORMER

Horjales, E., Altamirano, M.M., Calcagno, M.L., Garratt, R.C., Oliva, G.

(1999) Structure 7: 527-537

Released	2000-03-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	PROTEIN (GLUCOSAMINE 6-PHOSPHATE DEAMINASE) (protein)

Explore in 3D

1CL0 \| pdb_00001cl0	Download File View File

CRYSTAL STRUCTURE OF REDUCED THIOREDOXIN REDUCTASE FROM ESCHERICHIA COLI.

Lennon, B.W., Williams Jr, C.H., Ludwig, M.L.

(1999) Protein Sci 8: 2366-2379

Released	1999-12-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	THIOREDOXIN REDUCTASE (protein)
Unique Ligands	FAD

Explore in 3D

1D2T \| pdb_00001d2t	Download File View File

CRYSTAL STRUCTURE OF ACID PHOSPHATASE FROM ESCHERICHIA BLATTAE

Ishikawa, K., Mihara, Y., Gondoh, K., Suzuki, E., Asano, Y.

(2000) EMBO J 19: 2412-2423

Released	2000-12-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Shimwellia blattae
Macromolecule	ACID PHOSPHATASE (protein)
Unique Ligands	SO4

Explore in 3D

1DAB \| pdb_00001dab	Download File View File

The Structure of Bordetella Pertussis Virulence Factor P.69 Pertactin

Emsley, P., Charles, I.G., Fairweather, N.F., Isaacs, N.W.

(1996) Nature 381: 90-92

Released	1999-12-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bordetella pertussis
Macromolecule	P.69 PERTACTIN (protein)

Explore in 3D

1DB3 \| pdb_00001db3	Download File View File

E.COLI GDP-MANNOSE 4,6-DEHYDRATASE

Somoza, J.R., Menon, S., Somers, W.S., Sullivan, F.X.

(2000) Structure 8: 123-135

Released	1999-11-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	GDP-MANNOSE 4,6-DEHYDRATASE (protein)

Explore in 3D

1DOI \| pdb_00001doi	Download File View File

2FE-2S FERREDOXIN FROM HALOARCULA MARISMORTUI

Frolow, F., Harel, M., Sussman, J.L., Shoham, M.

(1996) Nat Struct Biol 3: 452-458

Released	1996-08-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Haloarcula marismortui
Macromolecule	2FE-2S FERREDOXIN (protein)
Unique Ligands	FES, K

Explore in 3D

1DXY \| pdb_00001dxy	Download File View File

STRUCTURE OF D-2-HYDROXYISOCAPROATE DEHYDROGENASE

Dengler, U., Niefind, K., Kiess, M., Schomburg, D.

(1997) J Mol Biology 267: 640-660

Released	1997-06-16
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Lacticaseibacillus casei
Macromolecule	D-2-HYDROXYISOCAPROATE DEHYDROGENASE (protein)
Unique Ligands	COI, NAD, SO4

Explore in 3D

1E12 \| pdb_00001e12	Download File View File

Halorhodopsin, a light-driven chloride pump

Essen, L.-O., Kolbe, M., Oesterhelt, D.

(2000) Science 288: 1390

Released	2000-06-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Halobacterium salinarum
Macromolecule	HALORHODOPSIN (protein)
Unique Ligands	CL, K, OLC, PLM, RET

Explore in 3D

1E94 \| pdb_00001e94	Download File View File

HslV-HslU from E.coli

Song, H.K., Hartmann, C., Ravishankar, R., Bochtler, M.

(2000) Proc Natl Acad Sci U S A 97: 14103

Released	2000-11-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	HEAT SHOCK PROTEIN HSLU (protein) HEAT SHOCK PROTEIN HSLV (protein)
Unique Ligands	ANP

Explore in 3D

1EJ2 \| pdb_00001ej2	Download File View File

Crystal structure of methanobacterium thermoautotrophicum nicotinamide mononucleotide adenylyltransferase with bound NAD+

Saridakis, V., Christendat, D., Kimber, M.S., Edwards, A.M., Pai, E.F., Midwest Center for Structural Genomics (MCSG), Northeast Structural Genomics Consortium (NESG)

(2001) J Biological Chem 276: 7225-7232

Released	2001-03-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE (protein)
Unique Ligands	NA, NAD, SO4

Explore in 3D

1EKR \| pdb_00001ekr	Download File View File

MOAC PROTEIN FROM E. COLI

Schindelin, H., Liu, M.T.W., Wuebbens, M.M., Rajagopalan, K.V.

(2000) Structure 8: 709-717

Released	2000-09-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C (protein)

Explore in 3D

1EKS \| pdb_00001eks	Download File View File

ASP128ALA VARIANT OF MOAC PROTEIN FROM E. COLI

Schindelin, H., Liu, M.T.W., Wuebbens, M.M., Rajagopalan, K.V.

(2000) Structure 8: 709-718

Released	2000-09-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C (protein)
Unique Ligands	TLA

Explore in 3D

1ELX \| pdb_00001elx	Download File View File

E. COLI ALKALINE PHOSPHATASE MUTANT (S102A)

Stec, B., Hehir, M., Brennan, C., Nolte, M., Kantrowitz, E.R.

(1998) J Mol Biology 277: 647-662

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	ALKALINE PHOSPHATASE (protein)
Unique Ligands	MG, PO4, ZN

Explore in 3D

1ELY \| pdb_00001ely	Download File View File

E. COLI ALKALINE PHOSPHATASE MUTANT (S102C)

Stec, B., Hehir, M., Brennan, C., Nolte, M., Kantrowitz, E.R.

(1998) J Mol Biology 277: 647-662

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	ALKALINE PHOSPHATASE (protein)
Unique Ligands	MG, PO4, ZN

Explore in 3D

1ELZ \| pdb_00001elz	Download File View File

E. COLI ALKALINE PHOSPHATASE MUTANT (S102G)

Stec, B., Hehir, M., Brennan, C., Nolte, M., Kantrowitz, E.R.

(1998) J Mol Biology 277: 647-662

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	ALKALINE PHOSPHATASE (protein)
Unique Ligands	MG, PO4, ZN

Explore in 3D

1EY2 \| pdb_00001ey2	Download File View File

HUMAN HOMOGENTISATE DIOXYGENASE WITH FE(II)

Timm, D.E., Titus, G.P., Penalva, M.A., Mueller, H.A., de Cordoba, S.M.

(2000) Nat Struct Biol 7: 542-546

Released	2000-11-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	HOMOGENTISATE 1,2-DIOXYGENASE (protein)
Unique Ligands	FE2

Explore in 3D

1EYB \| pdb_00001eyb	Download File View File

CRYSTAL STRUCTURE OF APO HUMAN HOMOGENTISATE DIOXYGENASE

Timm, D.E., Titus, G.P., Penalva, M.A., Mueller, H.A., de Cordoba, S.M.

(2000) Nat Struct Biol 7: 542-546

Released	2000-11-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	HOMOGENTISATE 1,2-DIOXYGENASE (protein)

Explore in 3D

1FPT \| pdb_00001fpt	Download File View File

THREE-DIMENSIONAL STRUCTURE OF THE COMPLEX BETWEEN THE FAB FRAGMENT OF AN NEUTRALIZING ANTIBODY FOR TYPE 1 POLIOVIRUS AND ITS VIRAL EPITOPE

Wien, M.W., Hogle, J.M.

(1995) Nat Struct Biol 2: 232-243

Released	1995-03-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human poliovirus 1 Mahoney Mus musculus
Macromolecule	FAB FRAGMENT OF AN NEUTRALIZING ANTIBODY FOR TYPE 1 POLIOVIRUS (protein) IGG2A-KAPPA C3 FAB (HEAVY CHAIN) (protein) IGG2A-KAPPA C3 FAB (LIGHT CHAIN) (protein)

1 to 25 of 979 Structures

Page 1 of 40

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A6R | pdb_00001a6r

1ALL | pdb_00001all

1AW9 | pdb_00001aw9

1BLL | pdb_00001bll

1BPM | pdb_00001bpm

1BPN | pdb_00001bpn

1BZ5 | pdb_00001bz5

1CD5 | pdb_00001cd5

1CL0 | pdb_00001cl0

1D2T | pdb_00001d2t

1DAB | pdb_00001dab

1DB3 | pdb_00001db3

1DOI | pdb_00001doi

1DXY | pdb_00001dxy

1E12 | pdb_00001e12

1E94 | pdb_00001e94

1EJ2 | pdb_00001ej2

1EKR | pdb_00001ekr

1EKS | pdb_00001eks

1ELX | pdb_00001elx

1ELY | pdb_00001ely

1ELZ | pdb_00001elz

1EY2 | pdb_00001ey2

1EYB | pdb_00001eyb

1FPT | pdb_00001fpt