Download MendeleyCrystal Structure of the Complex Formed between Alkaline Proteinase Savinase and Gramicidin S at 1.5A Resolution.
Bhatt, V.S., Kaur, P., Klupsch, S., Betzel, C., Brenner, S., Singh, T.P.To be published.
1TK2
Crystal Structure of the Complex formed between Alkaline Proteinase Savinase and Gramicidin S at 1.5A Resolution
- PDB DOI: https://doi.org/10.2210/pdb1TK2/pdb
- Classification: HYDROLASE/ANTIBIOTIC
- Organism(s): Lederbergia lenta, Brevibacillus brevis
- Mutation(s): No
- Deposited: 2004-06-08 Released: 2004-06-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.54 Å
- R-Value Free: 0.189
- R-Value Work: 0.169
- R-Value Observed: 0.170
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SUBTILISIN SAVINASE | 269 | Lederbergia lenta | Mutation(s): 0 EC: 3.4.21.62 |  | |
UniProt | |||||
Find proteins for P29600 (Lederbergia lenta) Explore P29600 Go to UniProtKB: P29600 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P29600 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| GRAMICIDIN S | 10 | Brevibacillus brevis | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | C [auth A], D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| ORN Query on ORN | B | L-PEPTIDE LINKING | C5 H12 N2 O2 |  | ALA |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_000219 Query on PRD_000219 | B | GRAMICIDIN S | Cyclic peptide / Antibiotic |  | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.54 Å
- R-Value Free: 0.189
- R-Value Work: 0.169
- R-Value Observed: 0.170
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.25 | α = 90 |
| b = 73.34 | β = 90 |
| c = 40.89 | γ = 90 |
| Software Name | Purpose |
|---|---|
| AMoRE | phasing |
| REFMAC | refinement |
| MOSFLM | data reduction |
| CCP4 | data scaling |
Entry History
Deposition Data
- Released Date: 2004-06-22 Deposition Author(s): Bhatt, V.S., Kaur, P., Klupsch, S., Betzel, C., Brenner, S., Singh, T.P.
Revision History (Full details and data files)
- Version 1.0: 2004-06-22
Type: Initial release - Version 1.1: 2011-06-14
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2011-07-27
Changes: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary - Version 1.4: 2012-12-12
Changes: Other - Version 1.5: 2023-08-23
Changes: Data collection, Database references, Derived calculations, Refinement description
