Download MendeleyThe crystal structure of aminopeptidase I (yscI) from Borrelia burgdorferi
Min, T., Gorman, J., Shapiro, L.To be published.
1Y7E | pdb_00001y7e
The Crystal Structure of Aminopeptidase I from Borrelia burgdorferi B31
- PDB DOI: https://doi.org/10.2210/pdb1Y7E/pdb
- Classification: HYDROLASE
- Organism(s): Borreliella burgdorferi
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2004-12-08 Released: 2005-01-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Free: 0.258 (Depositor), 0.270 (DCC)
- R-Value Work: 0.202 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.202 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable M18-family aminopeptidase 1 | 458 | Borreliella burgdorferi | Mutation(s): 7 Gene Names: apeA EC: 3.4.11 |  | |
UniProt | |||||
Find proteins for P0C925 (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)) Explore P0C925 Go to UniProtKB: P0C925 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0C925 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Free: 0.258 (Depositor), 0.270 (DCC)
- R-Value Work: 0.202 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.202 (Depositor)
Space Group: F 4 3 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 244.271 | α = 90 |
| b = 244.271 | β = 90 |
| c = 244.271 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CBASS | data collection |
| SCALEPACK | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2005-01-04 Deposition Author(s): Min, T., Gorman, J., Shapiro, L., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2005-01-04
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2024-11-06
Changes: Data collection, Database references, Structure summary
