2LX2 | pdb_00002lx2

1H,13C,15N assignments for an isoform of the type III antifreeze protein from notched-fin eelpout

PDB DOI: https://doi.org/10.2210/pdb2LX2/pdb
BMRB: 18657

Classification: ANTIFREEZE PROTEIN
Organism(s): Zoarces elongatus
Expression System: Escherichia coli
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2012-08-12 Released: 2013-07-24
Deposition Author(s): Kumeta, H., Ogura, K., Nishimiya, Y., Miura, A., Inagaki, F., Tsuda, S.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 20
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner

Kumeta, H., Ogura, K., Nishimiya, Y., Miura, A., Inagaki, F., Tsuda, S.

(2013) J Biomol NMR 55: 225-230

PubMed: 23288342 Search on PubMed
DOI: https://doi.org/10.1007/s10858-012-9703-9
Primary Citation of Related Structures:
2LX2, 2LX3

Organizational Affiliation

Faculty of Advanced Life Science, Department of Structural Biology, Hokkaido University, Kita21 Nishi11, Kita-ku, Sapporo, 001-0021, Japan.

Macromolecule Content

Total Structure Weight: 7.07 kDa
Atom Count: 488
Modelled Residue Count: 67
Deposited Residue Count: 67
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Type III antifreeze protein nfeAFP11	A	67	Zoarces elongatus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for Q53UI9 (Zoarces elongatus) Explore Q53UI9 Go to UniProtKB: Q53UI9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q53UI9
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 20
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2013-07-24

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-07-24
Type: Initial release
Version 1.1: 2023-06-14
Changes: Database references, Other
Version 1.2: 2024-05-15
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.