Download MendeleyCrystal structure of unknown conserved ybaA protein from Shigella flexneri
Minasov, G., Vorontsov, I.I., Shuvalova, L., Brunzelle, J.S., Kiryukhina, O., Collart, F.R., Joachimiak, A., Anderson, W.F.To be published.
2OKQ | pdb_00002okq
Crystal structure of unknown conserved ybaA protein from Shigella flexneri
- PDB DOI: https://doi.org/10.2210/pdb2OKQ/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Shigella flexneri
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2007-01-17 Released: 2007-02-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.226 (Depositor), 0.230 (DCC)
- R-Value Work: 0.183 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.185 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein ybaA | 141 | Shigella flexneri | Mutation(s): 0 Gene Names: ybaA |  | |
UniProt | |||||
Find proteins for P0AAQ9 (Shigella flexneri) Explore P0AAQ9 Go to UniProtKB: P0AAQ9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0AAQ9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NA Query on NA | C [auth A], D [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.226 (Depositor), 0.230 (DCC)
- R-Value Work: 0.183 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.185 (Depositor)
Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.843 | α = 90 |
| b = 61.843 | β = 90 |
| c = 137.32 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MAR345 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2007-02-06 Deposition Author(s): Minasov, G., Vorontsov, I.I., Shuvalova, L., Brunzelle, J.S., Kiryukhina, O., Collart, F.R., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-02-06
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2023-12-27
Changes: Data collection, Database references, Derived calculations
