Download MendeleyCrystal structure of hypothetical protein (ZP_00111901.1) from Nostoc punctiforme PCC 73102 at 1.90 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2P4O | pdb_00002p4o
CRYSTAL STRUCTURE OF A PUTATIVE LACTONASE OF THE SMP-30/GLUCONOLACTONASE/LRE-LIKE REGION FAMILY (NPUN_F0524) FROM NOSTOC PUNCTIFORME PCC 73102 AT 1.90 A RESOLUTION
- PDB DOI: https://doi.org/10.2210/pdb2P4O/pdb
- Classification: HYDROLASE
- Organism(s): Nostoc punctiforme PCC 73102
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-03-12 Released: 2007-04-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.219 (Depositor), 0.224 (DCC)
- R-Value Work: 0.172 (Depositor), 0.183 (DCC)
- R-Value Observed: 0.174 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| hypothetical protein | 306 | Nostoc punctiforme PCC 73102 | Mutation(s): 0 Gene Names: ZP_00111901.1 |  | |
UniProt | |||||
Find proteins for B2J846 (Nostoc punctiforme (strain ATCC 29133 / PCC 73102)) Explore B2J846 Go to UniProtKB: B2J846 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B2J846 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | B [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.219 (Depositor), 0.224 (DCC)
- R-Value Work: 0.172 (Depositor), 0.183 (DCC)
- R-Value Observed: 0.174 (Depositor)
Diffraction Data: https://doi.org/10.18430/M32P4O
Space Group: P 42 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 91.442 | α = 90 |
| b = 91.442 | β = 90 |
| c = 75.188 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| SOLVE | phasing |
| REFMAC | refinement |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
| CCP4 | data scaling |
Entry History
Deposition Data
- Released Date: 2007-04-17 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-04-17
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2017-10-25
Changes: Author supporting evidence - Version 1.5: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary
