Download MendeleyThe crystal structure of putative Cobalt transport ATP-binding protein (cbiO-2), ST1066
Hirata, K., Hasegawa, K., Ebihara, A., Yamamoto, M., Yokoyama, S.To be published.
2PJZ | pdb_00002pjz
The crystal structure of putative Cobalt transport ATP-binding protein (cbiO-2), ST1066
- PDB DOI: https://doi.org/10.2210/pdb2PJZ/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Sulfurisphaera tokodaii
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-04-17 Released: 2008-04-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.242 (Depositor), 0.240 (DCC)
- R-Value Work: 0.196 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.198 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein ST1066 | 263 | Sulfurisphaera tokodaii | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q972R9 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore Q972R9 Go to UniProtKB: Q972R9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q972R9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.242 (Depositor), 0.240 (DCC)
- R-Value Work: 0.196 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.198 (Depositor)
Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 102.094 | α = 90 |
| b = 102.094 | β = 90 |
| c = 104.662 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELXS | phasing |
Entry History
Deposition Data
- Released Date: 2008-04-22 Deposition Author(s): Hirata, K., Hasegawa, K., Ebihara, A., Yamamoto, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2008-04-22
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-03-13
Changes: Data collection, Database references, Derived calculations
