Download MendeleyCrystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
Vaijayanthimala, S., Velmurugan, D., Mizushima, T., Yamane, T., Yoshida, Y., Tanaka, K.To be published.
2RJ2 | pdb_00002rj2
Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
- PDB DOI: https://doi.org/10.2210/pdb2RJ2/pdb
- Classification: LIGASE
- Organism(s): Mus musculus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-10-14 Released: 2008-10-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.215 (Depositor), 0.210 (DCC)
- R-Value Work: 0.185 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.188 (Depositor)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| F-box only protein 2 | 185 | Mus musculus | Mutation(s): 0 Gene Names: Fbxo2, Fbx2 EC: 6.3.2.19 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q80UW2 (Mus musculus) Explore Q80UW2 Go to UniProtKB: Q80UW2 | |||||
IMPC: MGI:2446216 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q80UW2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NI Query on NI | B [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.215 (Depositor), 0.210 (DCC)
- R-Value Work: 0.185 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.188 (Depositor)
Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.76 | α = 90 |
| b = 61.76 | β = 90 |
| c = 115 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2008-10-14 Deposition Author(s): Vaijayanthimala, S., Velmurugan, D., Mizushima, T., Yamane, T., Yoshida, Y., Tanaka, K.
Revision History (Full details and data files)
- Version 1.0: 2008-10-14
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-01-25
Changes: Database references, Derived calculations - Version 1.3: 2023-11-08
Changes: Data collection, Refinement description
