Download MendeleyRole of protein domain-modularity in designating capsid assembly and antigenicity
Miyazaki, N., Xing, L., Wang, C.-Y., Li, T.-C., Takeda, N., Higashiura, A., Nakagawa, A., Tsukihara, T., Miyamura, T., Cheng, R.H.To be published.
2ZZQ | pdb_00002zzq
Crystal structure analysis of the HEV capsid protein, PORF2
- PDB DOI: https://doi.org/10.2210/pdb2ZZQ/pdb
- Classification: VIRUS
- Organism(s): Hepatitis E virus (strain Myanmar)
- Expression System: Trichoplusia ni
- Mutation(s): No
- Deposited: 2009-02-23 Released: 2010-03-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.81 Å
- R-Value Free: 0.245 (Depositor), 0.240 (DCC)
- R-Value Work: 0.242 (Depositor), 0.250 (DCC)
- R-Value Observed: 0.242 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein ORF3, Capsid protein | 552 | Hepatitis E virus (strain Myanmar) | Mutation(s): 0 Gene Names: ORF3, ORF2 |  | |
UniProt | |||||
Find proteins for P29326 (Hepatitis E virus genotype 1 (isolate Human/Burma)) Explore P29326 Go to UniProtKB: P29326 | |||||
Find proteins for P69616 (Hepatitis E virus genotype 1 (isolate Human/Burma)) Explore P69616 Go to UniProtKB: P69616 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Groups | P69616P29326 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.81 Å
- R-Value Free: 0.245 (Depositor), 0.240 (DCC)
- R-Value Work: 0.242 (Depositor), 0.250 (DCC)
- R-Value Observed: 0.242 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 337 | α = 90 |
| b = 347 | β = 90 |
| c = 354 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2010-03-09 Deposition Author(s): Miyazaki, N., Xing, L., Wang, C.-Y., Li, T.-C., Takeda, N., Higashiura, A., Nakagawa, A., Tsukihara, T., Miyamura, T., Cheng, R.H.
Revision History (Full details and data files)
- Version 1.0: 2010-03-09
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-08-09
Changes: Data collection, Source and taxonomy - Version 1.3: 2024-03-13
Changes: Data collection, Database references, Derived calculations
