Download MendeleyThe crystal structure of the substrate binding protein of the ABC transporter from Agrobacterium tumefaciens.
Zhang, R., Xu, X., Zheng, H., Savchenko, A., Edwards, A.M., Joachimiak, A.To be published.
3C9H
Crystal structure of the substrate binding protein of the ABC transporter from Agrobacterium tumefaciens
- PDB DOI: https://doi.org/10.2210/pdb3C9H/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Agrobacterium fabrum str. C58
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2008-02-15 Released: 2008-03-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.228
- R-Value Work: 0.173
- R-Value Observed: 0.175
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ABC transporter, substrate binding protein | 355 | Agrobacterium fabrum str. C58 | Mutation(s): 0 Gene Names: GI:17936349, AGR_C_4480, Atu2467 |  | |
UniProt | |||||
Find proteins for Q7CWZ6 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore Q7CWZ6 Go to UniProtKB: Q7CWZ6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7CWZ6 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CIT Query on CIT | D [auth A], F [auth B] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | ||
| MG Query on MG | C [auth A], E [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.228
- R-Value Work: 0.173
- R-Value Observed: 0.175
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 75.313 | α = 90 |
| b = 86.947 | β = 90 |
| c = 109.642 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| MLPHARE | phasing |
Entry History
Deposition Data
- Released Date: 2008-03-04 Deposition Author(s): Zhang, R., Xu, X., Zheng, H., Savchenko, A., Edwards, A.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-03-04
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations
