3LQ7

Crystal structure of glutathione s-transferase from agrobacterium tumefaciens str. c58

PDB DOI: https://doi.org/10.2210/pdb3LQ7/pdb

Classification: TRANSFERASE
Organism(s): Agrobacterium fabrum str. C58
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-02-08 Released: 2010-02-23
Deposition Author(s): Patskovsky, Y., Toro, R., Gilmore, M., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.288 (Depositor), 0.290 (DCC)
R-Value Work:
0.243 (Depositor), 0.240 (DCC)
R-Value Observed:
0.245 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal Structure of Glutathione S-Transferase from Agrobacterium Tumefaciens

Patskovsky, Y., Toro, R., Gilmore, M., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 82.16 kDa
Atom Count: 4,945
Modelled Residue Count: 602
Deposited Residue Count: 720
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase	A, B, C	240	Agrobacterium fabrum str. C58	Mutation(s): 0 Gene Names: AGR_L_2272, Atu3701, GST
UniProt
Find proteins for A9CFJ9 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore A9CFJ9 Go to UniProtKB: A9CFJ9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A9CFJ9
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.288 (Depositor), 0.290 (DCC)
R-Value Work: 0.243 (Depositor), 0.240 (DCC)
R-Value Observed: 0.245 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.92	α = 90
b = 111.245	β = 90
c = 246.006	γ = 90

Software Package:

Software Name	Purpose
SHELX	model building
RESOLVE	model building
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SHELX	phasing
RESOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2010-02-23

Deposition Author(s):

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2010-02-23
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2018-11-21
Changes: Data collection, Structure summary
Version 1.3: 2021-02-10
Changes: Database references, Structure summary
Version 1.4: 2024-02-21
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.