Download MendeleyInvestigations on the Determinants Responsible for Low Molar Mass Dextran Formation by DSR-M Dextransucrase
Claverie, M., Cioci, G., Vuillemin, M., Monties, N., Roblin, P., Lippens, G., Remaud-simeon, M., Moulis, C.(2017) ACS Catal 7: 7106-7119
5LFC | pdb_00005lfc
Crystal structure of Leuconostoc citreum NRRL B-1299 N-terminally truncated dextransucrase DSR-M
- PDB DOI: https://doi.org/10.2210/pdb5LFC/pdb
- Classification: TRANSFERASE
- Organism(s): Leuconostoc citreum
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2016-07-01 Released: 2017-10-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Free: 0.248 (Depositor), 0.250 (DCC)
- R-Value Work: 0.221 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.223 (Depositor)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DsrV | 1,293 | Leuconostoc citreum | Mutation(s): 0 Gene Names: dsrV EC: 2.4.1.5 |  | |
UniProt | |||||
Find proteins for A0A2H4A2M1 (Leuconostoc citreum) Explore A0A2H4A2M1 Go to UniProtKB: A0A2H4A2M1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A2H4A2M1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | D [auth A], F [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CA Query on CA | C [auth A], E [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Free: 0.248 (Depositor), 0.250 (DCC)
- R-Value Work: 0.221 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.223 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 105.84 | α = 90 |
| b = 128.71 | β = 90 |
| c = 229.34 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2017-10-11 Deposition Author(s): Claverie, M., Cioci, G., Remaud-simeon, M., Moulis, C., Tranier, S.
Revision History (Full details and data files)
- Version 1.0: 2017-10-11
Type: Initial release - Version 1.1: 2024-01-10
Changes: Data collection, Database references, Refinement description
