Download MendeleyPutative Antitoxin HicB3 from Escherichia coli str. K-12 substr. DH10B
Osipiuk, J., Tesar, C., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
6U0I | pdb_00006u0i
Putative Antitoxin HicB3 from Escherichia coli str. K-12 substr. DH10B
- PDB DOI: https://doi.org/10.2210/pdb6U0I/pdb
- Classification: ANTITOXIN
- Organism(s): Escherichia coli str. K-12 substr. DH10B
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-08-14 Released: 2019-08-28
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.249 (Depositor), 0.250 (DCC)
- R-Value Work: 0.196 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.198 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Antitoxin HicB | 148 | Escherichia coli str. K-12 substr. DH10B | Mutation(s): 0 Gene Names: hicB_3, ydcQ |  | |
UniProt | |||||
Find proteins for C3TAR7 (Escherichia coli) Explore C3TAR7 Go to UniProtKB: C3TAR7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C3TAR7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | E [auth A], F [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.249 (Depositor), 0.250 (DCC)
- R-Value Work: 0.196 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.198 (Depositor)
Diffraction Data: https://doi.org/10.18430/m36u0i
Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.045 | α = 90 |
| b = 86.476 | β = 96.1 |
| c = 122.888 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-08-28 Deposition Author(s): Osipiuk, J., Tesar, C., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201200026C |
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700060C |
Revision History (Full details and data files)
- Version 1.0: 2019-08-28
Type: Initial release - Version 1.1: 2019-12-18
Changes: Author supporting evidence - Version 1.2: 2024-10-16
Changes: Data collection, Database references, Structure summary
