9B9F | pdb_00009b9f

Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-B3 and extracellular domains of TGFBRI and TGFBRII


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 
    0.278 (Depositor), 0.278 (DCC) 
  • R-Value Work: 
    0.235 (Depositor), 0.235 (DCC) 
  • R-Value Observed: 
    0.237 (Depositor) 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structures of TGF-beta with betaglycan and signaling receptors reveal mechanisms of complex assembly and signaling.

Wieteska, L.Taylor, A.B.Punch, E.Coleman, J.A.Conway, I.O.Lin, Y.F.Byeon, C.H.Hinck, C.S.Krzysiak, T.Ishima, R.Lopez-Casillas, F.Cherepanov, P.Bernard, D.J.Hill, C.S.Hinck, A.P.

(2025) Nat Commun 16: 1778-1778

  • DOI: https://doi.org/10.1038/s41467-025-56796-9
  • Primary Citation of Related Structures:  
    9B9F, 9FDY, 9FK5, 9FKP

  • PubMed Abstract: 

    Betaglycan (BG) is a transmembrane co-receptor of the transforming growth factor-β (TGF-β) family of signaling ligands. It is essential for embryonic development, tissue homeostasis and fertility in adults. It functions by enabling binding of the three TGF-β isoforms to their signaling receptors and is additionally required for inhibin A (InhA) activity. Despite its requirement for the functions of TGF-βs and InhA in vivo, structural information explaining BG ligand selectivity and its mechanism of action is lacking. Here, we determine the structure of TGF-β bound both to BG and the signaling receptors, TGFBR1 and TGFBR2. We identify key regions responsible for ligand engagement, which has revealed binding interfaces that differ from those described for the closely related co-receptor of the TGF-β family, endoglin, thus demonstrating remarkable evolutionary adaptation to enable ligand selectivity. Finally, we provide a structural explanation for the hand-off mechanism underlying TGF-β signal potentiation.


  • Organizational Affiliation

    Department of Structural Biology, University of Pittsburgh, Pittsburgh, PA, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transforming growth factor beta-3
A, F
112Homo sapiensMutation(s): 0 
Gene Names: TGFB3
UniProt & NIH Common Fund Data Resources
Find proteins for P10600 (Homo sapiens)
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Go to UniProtKB:  P10600
PHAROS:  P10600
GTEx:  ENSG00000119699 
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UniProt GroupP10600
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Transforming growth factor beta-3 triple mutant
B, G
112Homo sapiensMutation(s): 3 
Gene Names: TGFB3
UniProt & NIH Common Fund Data Resources
Find proteins for P10600 (Homo sapiens)
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Go to UniProtKB:  P10600
PHAROS:  P10600
GTEx:  ENSG00000119699 
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UniProt GroupP10600
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Transforming growth factor beta receptor type-1
C, H
87Homo sapiensMutation(s): 0 
Gene Names: TGFBR1ALK5SKR4
EC: 2.7.11.30
UniProt & NIH Common Fund Data Resources
Find proteins for P36897 (Homo sapiens)
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PHAROS:  P36897
GTEx:  ENSG00000106799 
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UniProt GroupP36897
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Transforming growth factor beta receptor type-2
D, I
113Homo sapiensMutation(s): 0 
Gene Names: TGFBR2
EC: 2.7.11.30
UniProt & NIH Common Fund Data Resources
Find proteins for P37173 (Homo sapiens)
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PHAROS:  P37173
GTEx:  ENSG00000163513 
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UniProt GroupP37173
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Transforming growth factor beta receptor type-3
E, J
338Danio rerioMutation(s): 2 
Gene Names: tgfbr3si:ch73-18k18.1
UniProt
Find proteins for A0A0H3UK16 (Danio rerio)
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UniProt GroupA0A0H3UK16
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free:  0.278 (Depositor), 0.278 (DCC) 
  • R-Value Work:  0.235 (Depositor), 0.235 (DCC) 
  • R-Value Observed: 0.237 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 195.136α = 90
b = 200.923β = 90
c = 47.436γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
autoPROCdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM058670
H2020 Marie Curie Actions of the European CommissionEuropean Union893196
National Institutes of Health/Office of the DirectorUnited StatesOD030374

Revision History  (Full details and data files)

  • Version 1.0: 2025-03-12
    Type: Initial release