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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Ku, B."

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Search Summary

This query matches 43 Structures.

Refinements

Structure Determination Methodology

experimental (43)

Scientific Name of Source Organism

	Homo sapiens (25)
	Mus musculus (6)
	Salmonella enterica subsp. enterica (3)
	Thermococcus kodakarensis KOD1 (3)
	Acanthamoeba polyphaga mimivirus (2)
	Drosophila melanogaster (2)
	Escherichia coli (2)
	Escherichia coli K-12 (2)
	human papillomavirus 18 (2)
	Ebola virus (1)

More...

Taxonomy

	Eukaryota (29)
	Bacteria (8)
	Archaea (4)
	Monodnaviria (4)
	Varidnaviria (2)
	Duplodnaviria (1)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (43)

Polymer Entity Type

Protein (43)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (13)
	2.0 - 2.5 (15)
	2.5 - 3.0 (8)
	3.0 - 3.5 (4)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (8)
	2015 - 2019 (18)
	2020 - 2024 (11)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (13)
	Isomerases (2)
	Transferases (4)

Symmetry Type

	Asymmetric (23)
	Cyclic (16)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (9)
	Artifacts (4)
	All alpha proteins (2)
	All beta proteins (2)
	Alpha and beta proteins (a+b) (1)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 43 Structures

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2WCU \| pdb_00002wcu	Download File View File

Crystal structure of mammalian FucU

Lee, K.-H., Kim, M.-S., Suh, H.-Y., Ku, B., Song, Y.-L., Oh, B.-H.

(2009) J Mol Biology 391: 178

Released	2009-11-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	PROTEIN FUCU HOMOLOG (protein)
Unique Ligands	FUC

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2WCV \| pdb_00002wcv	Download File View File

Crystal structure of bacterial FucU

Lee, K.-H., Kim, M.-S., Suh, H.-Y., Ku, B., Song, Y.-L., Oh, B.-H.

(2009) J Mol Biology 391: 178

Released	2009-11-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	L-FUCOSE MUTAROTASE (protein)
Unique Ligands	FUC

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2WMM \| pdb_00002wmm	Download File View File

Crystal structure of the hinge domain of MukB

Ku, B., Oh, B.-H.

(2010) Proteins 78: 1483-1490

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	Chromosome partition protein MukB (protein)
Unique Ligands	MLT

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2XA0 \| pdb_00002xa0	Download File View File

Crystal structure of BCL-2 in complex with a BAX BH3 peptide

Ku, B., Oh, B.H.

(2011) Cell Res 21: 627

Released	2010-11-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	APOPTOSIS REGULATOR BAX (protein) APOPTOSIS REGULATOR BCL-2 (protein)

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3BL2 \| pdb_00003bl2	Download File View File

Crystal Structure of M11, the BCL-2 Homolog of Murine Gamma-herpesvirus 68, Complexed with Mouse Beclin1 (residues 106-124)

Oh, B.-H., Woo, J.-S., Ku, B.

(2008) PLoS Pathog 4: e25-e25

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Murid gammaherpesvirus 4 Mus musculus
Macromolecule	Beclin-1 (protein) V-bcl-2 (protein)

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3EUH \| pdb_00003euh	Download File View File

Crystal Structure of the MukE-MukF Complex

Suh, M.K., Ku, B., Ha, N.C., Woo, J.S., Oh, B.H.

(2009) Cell 136: 85-96

Released	2009-01-20
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	Chromosome partition protein mukF (protein) MukE (protein)
Unique Ligands	GLY

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3UEB \| pdb_00003ueb	Download File View File

Crystal structure of TON_0450 from Thermococcus onnurineus NA1

Kang, H.A., Ku, B., Doung, M., Oh, B.H.

To be published

Released	2012-10-10
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Putative uncharacterized protein (protein)

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4AKF \| pdb_00004akf	Download File View File

Crystal structure of VipD from Legionella pneumophila

Lee, K.-H., Ku, B., Oh, B.-H.

(2012) PLoS Pathog 8: 3082

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Legionella pneumophila
Macromolecule	VIPD (protein)

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4JGH \| pdb_00004jgh	Download File View File

Structure of the SOCS2-Elongin BC complex bound to an N-terminal fragment of Cullin5

Kim, Y.K., Kwak, M.J., Ku, B., Suh, H.Y., Joo, K., Lee, J., Jung, J.U., Oh, B.H.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1587-1597

Released	2013-08-07
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Cullin-5 (protein) Suppressor of cytokine signaling 2 (protein) Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein)

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4JNB \| pdb_00004jnb	Download File View File

Crystal structure of the Catalytic Domain of Human DUSP12

Jeon, T.J., Chien, P.N., Ku, B., Kim, S.J., Ryu, S.E.

(2014) Acta Crystallogr D Biol Crystallogr 70: 421-435

Released	2014-03-26
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein phosphatase 12 (protein)
Unique Ligands	SO4

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4KI9 \| pdb_00004ki9	Download File View File

Crystal structure of the catalytic domain of human DUSP12 at 2.0 A resolution

Jeon, T.J., Chien, P.N., Ku, B., Kim, S.J., Ryu, S.E.

(2014) Acta Crystallogr D Biol Crystallogr 70: 421-435

Released	2014-02-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein phosphatase 12 (protein)
Unique Ligands	PO4

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4N9J \| pdb_00004n9j	Download File View File

Crystal structure of the cryptic polo box domain of human Plk4

Ku, B., Kim, J.H., Lee, K.S., Kim, S.J.

(2014) Nat Struct Mol Biol 21: 696-703

Released	2014-07-02
Method	X-RAY DIFFRACTION 2.601 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase PLK4 (protein)
Unique Ligands	CL, SO4

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4XB0 \| pdb_00004xb0	Download File View File

Structure of the Plk2 polo-box domain

Kim, J.H., Ku, B., Kim, S.J.

(2015) Proteins 83: 1201-1208

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.701 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase PLK2 (protein)
Unique Ligands	CL, PO4

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4YJ4 \| pdb_00004yj4	Download File View File

Crystal structure of Bcl-xL in complex with the BIM BH3 domain containing Ile155-to-Arg and Glu158-to-phosphoserine mutations

Ku, B., Ha, N.-C., Oh, B.-H.

(2015) Cell Death Dis 6: e1804-e1804

Released	2015-07-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Bcl-2-like protein 1 (protein) Bcl-2-like protein 1, BIM BH3 domain (protein)
Unique Ligands	ACT, CL

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5CRU \| pdb_00005cru	Download File View File

Crystal structure of the Bro domain of HD-PTP

Lee, J., Ku, B., Kim, S.J.

(2016) PLoS One 11: e0149113-e0149113

Released	2016-02-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 23 (protein)

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5CRV \| pdb_00005crv	Download File View File

Crystal structure of the Bro domain of HD-PTP in a complex with the core region of STAM2

Lee, J., Ku, B., Kim, S.J.

(2016) PLoS One 11: e0149113-e0149113

Released	2016-02-24
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Homo sapiens
Macromolecule	Signal transducing adapter molecule 2 (protein) Tyrosine-protein phosphatase non-receptor type 23 (protein)
Unique Ligands	GOL

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5GLJ \| pdb_00005glj	Download File View File

Crystal Structure of PDZ1 Domain of Human Protein Tyrosine Phosphatase PTP-Bas

Lee, S.O., Ku, B., Chi, S.W.

(2016) Biochem Biophys Res Commun 478: 1205-1210

Released	2016-11-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 13 (protein)
Unique Ligands	CL

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5GOT \| pdb_00005got	Download File View File

Crystal structure of SP-PTP, low molecular weight protein tyrosine phosphatase from Streptococcus pyogenes

Ku, B., Keum, C.W., KIim, S.J.

(2016) Biochem Biophys Res Commun 478: 1217-1222

Released	2016-09-07
Method	X-RAY DIFFRACTION 1.902 Å
Organisms	Streptococcus pyogenes
Macromolecule	Low molecular weight phosphotyrosine phosphatase family protein (protein)
Unique Ligands	CL

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5XC3 \| pdb_00005xc3	Download File View File

Crystal structure of Acanthamoeba polyphaga mimivirus Rab GTPase in complex with GDP

Ku, B., You, J.A., Kim, S.J.

(2017) Arch Virol 162: 3407-3416

Released	2017-10-25
Method	X-RAY DIFFRACTION 1.497 Å
Organisms	Acanthamoeba polyphaga mimivirus
Macromolecule	Probable Rab-related GTPase (protein)
Unique Ligands	GDP, MG

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5XC5 \| pdb_00005xc5	Download File View File

Crystal structure of Acanthamoeba polyphaga mimivirus Rab GTPase in complex with GTP

Ku, B., You, J.A., Kim, S.J.

(2017) Arch Virol 162: 3407-3416

Released	2017-10-25
Method	X-RAY DIFFRACTION 1.398 Å
Organisms	Acanthamoeba polyphaga mimivirus
Macromolecule	Probable Rab-related GTPase (protein)
Unique Ligands	ACT, GTP, MG

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5Y15 \| pdb_00005y15	Download File View File

Crystal structure of human DUSP28

Ku, B., Hong, W., Kim, S.J., Ryu, S.E.

(2017) PLoS One 12: e0187701-e0187701

Released	2017-11-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity phosphatase 28 (protein)
Unique Ligands	PO4

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5Y16 \| pdb_00005y16	Download File View File

Crystal structure of human DUSP28(Y102H)

Ku, B., Kim, M., Kim, S.J., Ryu, S.E.

(2017) PLoS One 12: e0187701-e0187701

Released	2017-11-22
Method	X-RAY DIFFRACTION 2.399 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity phosphatase 28 (protein)
Unique Ligands	CL, PO4

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5Z59 \| pdb_00005z59	Download File View File

Crystal structure of Tk-PTP in the inactive form

Ku, B., Yun, H.Y., Kim, S.J.

(2018) PLoS One 13: e0197635-e0197635

Released	2018-06-27
Method	X-RAY DIFFRACTION 1.703 Å
Organisms	Thermococcus kodakarensis KOD1
Macromolecule	Protein-tyrosine phosphatase (protein)

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5Z5A \| pdb_00005z5a	Download File View File

Crystal structure of Tk-PTP in the active form

Ku, B., Yun, H.Y., Kim, S.J.

(2018) PLoS One 13: e0197635-e0197635

Released	2018-07-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermococcus kodakarensis KOD1
Macromolecule	Protein-tyrosine phosphatase (protein)
Unique Ligands	VN3

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5Z5B \| pdb_00005z5b	Download File View File

Crystal structure of Tk-PTP in the G95A mutant form

Ku, B., Yun, H.Y., Kim, S.J.

(2018) PLoS One 13: e0197635-e0197635

Released	2018-06-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermococcus kodakarensis KOD1
Macromolecule	Protein-tyrosine phosphatase (protein)
Unique Ligands	CL, FMT

1 to 25 of 43 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2WCU | pdb_00002wcu

2WCV | pdb_00002wcv

2WMM | pdb_00002wmm

2XA0 | pdb_00002xa0

3BL2 | pdb_00003bl2

3EUH | pdb_00003euh

3UEB | pdb_00003ueb

4AKF | pdb_00004akf

4JGH | pdb_00004jgh

4JNB | pdb_00004jnb

4KI9 | pdb_00004ki9

4N9J | pdb_00004n9j

4XB0 | pdb_00004xb0

4YJ4 | pdb_00004yj4

5CRU | pdb_00005cru

5CRV | pdb_00005crv

5GLJ | pdb_00005glj

5GOT | pdb_00005got

5XC3 | pdb_00005xc3

5XC5 | pdb_00005xc5

5Y15 | pdb_00005y15

5Y16 | pdb_00005y16

5Z59 | pdb_00005z59

5Z5A | pdb_00005z5a

5Z5B | pdb_00005z5b