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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Peng, X."

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Search Summary

This query matches 57 Structures.

Refinements

Structure Determination Methodology

experimental (57)

Scientific Name of Source Organism

	Enterovirus A71 (12)
	Homo sapiens (11)
	Lactiplantibacillus plantarum (8)
	Equus caballus (7)
	Streptococcus parasanguinis (5)
	unidentified (5)
	Mus musculus (2)
	Plasmodium falciparum 3D7 (2)
	Streptococcus agalactiae (2)
	synthetic construct (2)

More...

Taxonomy

	Eukaryota (22)
	Bacteria (16)
	Riboviria (14)
	unclassified sequences (5)
	other sequences (2)
	Adnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (51)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

	Protein (48)
	RNA (9)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (20)
	2.0 - 2.5 (20)
	2.5 - 3.0 (7)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	> 4.5 (3)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (2)
	2010 - 2014 (13)
	2015 - 2019 (21)
	2020 - 2024 (15)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (15)
	Transferases (1)

Membrane Protein Annotation

	MemProtMD (3)
	OPM (3)
	PDBTM (3)
	mpstruc (1)

Symmetry Type

	Asymmetric (24)
	Cyclic (11)
	Octahedral (7)
	Dihedral (6)
	Icosahedral (2)

SCOP Classification

	All beta proteins (12)
	Artifacts (9)
	Low resolution protein structures (2)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 57 Structures

Page 1 of 3

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1DGI \| pdb_00001dgi	Download File View File

Cryo-EM structure of human poliovirus(serotype 1)complexed with three domain CD155

He, Y., Bowman, V.D., Mueller, S., Bator, C.M., Bella, J., Peng, X., Baker, T.S., Wimmer, E., Kuhn, R.J., Rossmann, M.G.

(2000) Proc Natl Acad Sci U S A 97: 79-84

Released	2000-01-24
Method	ELECTRON MICROSCOPY 22 Å
Organisms	Homo sapiens Poliovirus 1
Macromolecule	POLIOVIRUS RECEPTOR (protein) VP1 (protein) VP2 (protein) VP3 (protein) VP4 (protein)

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1NN8 \| pdb_00001nn8	Download File View File

CryoEM structure of poliovirus receptor bound to poliovirus

He, Y., Mueller, S., Chipman, P.R., Bator, C.M., Peng, X., Bowman, V.D., Mukhopadhyay, S., Wimmer, E., Kuhn, R.J., Rossmann, M.G.

(2003) J Virol 77: 4827-4835

Released	2004-01-27
Method	ELECTRON MICROSCOPY 15 Å
Organisms	Homo sapiens Human poliovirus 1 Mahoney
Macromolecule	coat protein VP1 (protein) coat protein VP2 (protein) coat protein VP3 (protein) coat protein VP4 (protein) poliovirus receptor (protein)
Unique Ligands	MYR

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1Z9M \| pdb_00001z9m	Download File View File

Crystal Structure of Nectin-like molecule-1 protein Domain 1

Dong, X., Xu, F., Gong, Y., Gao, J., Lin, P., Chen, T., Peng, Y., Qiang, B., Yuan, J., Peng, X., Rao, Z.

(2006) J Biological Chem 281: 10610-10617

Released	2006-02-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	GAPA225 (protein)

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3EFH \| pdb_00003efh	Download File View File

Crystal structure of human phosphoribosyl pyrophosphate synthetase 1

Li, X., Peng, X., Li, Y.

To be published

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Ribose-phosphate pyrophosphokinase 1 (protein)
Unique Ligands	SO4

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4FVB \| pdb_00004fvb	Download File View File

Crystal structure of EV71 2A proteinase C110A mutant

Cai, Q., Muhammad, Y., Liu, W., Gao, Z., Peng, X., Cai, Y., Wu, C., Zheng, Q., Li, J., Lin, T.

(2013) J Virol 87: 7348-7356

Released	2013-06-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Enterovirus A71
Macromolecule	2A proteinase (protein)
Unique Ligands	ZN

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4FVD \| pdb_00004fvd	Download File View File

Crystal structure of EV71 2A proteinase C110A mutant in complex with substrate

Cai, Q., Muhammad, Y., Liu, W., Gao, Z., Peng, X., Cai, Y., Wu, C., Zheng, Q., Li, J., Lin, T.

(2013) J Virol 87: 7348-7356

Released	2013-06-19
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Enterovirus A71
Macromolecule	10-mer peptide from 2A proteinase (protein) 2A proteinase (protein)
Unique Ligands	ZN

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4GHQ \| pdb_00004ghq	Download File View File

Crystal structure of EV71 3C proteinase

Chen, C., Wu, C., Cai, Q., Li, N., Peng, X., Cai, Y., Yin, K., Chen, X., Wang, X., Zhang, R., Liu, L., Chen, S., Li, J., Lin, T.

(2013) Acta Crystallogr D Biol Crystallogr 69: 866-871

Released	2013-06-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Enterovirus A71
Macromolecule	3C proteinase (protein)

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4GHT \| pdb_00004ght	Download File View File

Crystal structure of EV71 3C proteinase in complex with AG7088

Chen, C., Wu, C., Cai, Q., Li, N., Peng, X., Cai, Y., Yin, K., Chen, X., Wang, X., Zhang, R., Liu, L., Chen, S., Li, J., Lin, T.

(2013) Acta Crystallogr D Biol Crystallogr 69: 866-871

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Enterovirus A71
Macromolecule	3C proteinase (protein)
Unique Ligands	AG7

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4J0C \| pdb_00004j0c	Download File View File

tannin acyl hydrolase from Lactobacillus plantarum (native structure)

Wu, M., Wang, Q., Peng, X., Wen, H., Chen, Q., McKinstry, W.J.

(2013) J Mol Biology 425: 2737-2751

Released	2013-05-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	Tannase (protein)
Unique Ligands	1PE, PEG

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4J0D \| pdb_00004j0d	Download File View File

tannin acyl hydrolase from Lactobacillus plantarum (Cadmium)

Ren, B., Wu, M., Wang, Q., Peng, X., Wen, H., Chen, Q., McKinstry, W.J.

(2013) J Mol Biology 425: 2737-2751

Released	2013-05-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	Tannase (protein)
Unique Ligands	CD, PEG, PG4, PGE

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4J0G \| pdb_00004j0g	Download File View File

Tannin acyl hydrolase (mercury derivative)

Ren, B., Wu, M., Wang, Q., Peng, X., Wen, H., Chen, Q., McKinstry, W.J.

(2013) J Mol Biology 425: 2737-2751

Released	2013-05-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	Tannase (protein)
Unique Ligands	1PE, HG, PEG

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4J0H \| pdb_00004j0h	Download File View File

Tannin acyl hydrolase in complex with gallic acid

Ren, B., Wu, M., Wang, Q., Peng, X., Wen, H., Chen, Q., McKinstry, W.J.

(2013) J Mol Biology 425: 2737-2751

Released	2013-05-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	Tannase (protein)
Unique Ligands	GDE, PEG, PG4

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4J0I \| pdb_00004j0i	Download File View File

Tannin acyl hydrolase in complex with 3,4-dihydroxybenzoate

Ren, B., Wu, M., Wang, Q., Peng, X., Wen, H., Chen, Q., McKinstry, W.J.

(2013) J Mol Biology 425: 2737-2751

Released	2013-05-22
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	Tannase (protein)
Unique Ligands	DHB, PEG, PG4

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4J0J \| pdb_00004j0j	Download File View File

Tannin acyl hydrolase in complex with ethyl 3,5-dihydroxybenzoate

Ren, B., Wu, M., Wang, Q., Peng, X., Wen, H., Chen, Q., McKinstry, W.J.

(2013) J Mol Biology 425: 2737-2751

Released	2013-05-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	Tannase (protein)
Unique Ligands	E35

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4J0K \| pdb_00004j0k	Download File View File

Tannin acyl hydrolase in complex with ethyl gallate

Ren, B., Wu, M., Wang, Q., Peng, X., Wen, H., Chen, Q., McKinstry, W.J.

(2013) J Mol Biology 425: 2737-2751

Released	2013-05-22
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	Tannase (protein)
Unique Ligands	EGR, PEG, PG4, PGE

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4JUI \| pdb_00004jui	Download File View File

crystal structure of tannase from from Lactobacillus plantarum

Ren, B., Wu, M., Wang, Q., Peng, X., Wen, H., McKinstry, W.J., Chen, Q.

(2013) J Mol Biology 425: 2737-2751

Released	2013-05-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	Tannase (protein)
Unique Ligands	EGR, PEG, PG4, PGE

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4MZ7 \| pdb_00004mz7	Download File View File

Structural insight into dGTP-dependent activation of tetrameric SAMHD1 deoxynucleoside triphosphate triphosphohydrolase

Zhu, C., Gao, W., Zhao, K., Qin, X., Zhang, Y., Peng, X., Zhang, L., Dong, Y., Zhang, W., Li, P., Wei, W., Gong, Y., Yu, X.F.

(2013) Nat Commun 4: 2722-2722

Released	2013-11-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 (protein)
Unique Ligands	DGT, DTP, MG, ZN

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4RXO \| pdb_00004rxo	Download File View File

The structure of GTP-bound SAMHD1

Zhu, C.F., Wei, W., Peng, X., Dong, Y.H., Gong, Y., Yu, X.F.

(2015) Acta Crystallogr D Biol Crystallogr 71: 516-524

Released	2015-03-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 (protein)
Unique Ligands	GTP, PO4, ZN

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4RXP \| pdb_00004rxp	Download File View File

The structure of GTP-dATP-bound SAMHD1

Zhu, C.F., Wei, W., Peng, X., Dong, Y.H., Gong, Y., Yu, X.F.

(2015) Acta Crystallogr D Biol Crystallogr 71: 516-524

Released	2015-03-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 (protein)
Unique Ligands	DTP, GTP, MG

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4RXQ \| pdb_00004rxq	Download File View File

The structure of GTP-dUTP-bound SAMHD1

Zhu, C.F., Wei, W., Peng, X., Dong, Y.H., Gong, Y., Yu, X.F.

(2015) Acta Crystallogr D Biol Crystallogr 71: 516-524

Released	2015-03-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 (protein)
Unique Ligands	DUT, GTP, MG

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4RXR \| pdb_00004rxr	Download File View File

The structure of GTP-dCTP-bound SAMHD1

Zhu, C.F., Wei, W., Peng, X., Dong, Y.H., Gong, Y., Yu, X.F.

(2015) Acta Crystallogr D Biol Crystallogr 71: 516-524

Released	2015-03-11
Method	X-RAY DIFFRACTION 2.117 Å
Organisms	Homo sapiens
Macromolecule	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 (protein)
Unique Ligands	DCP, GTP, MG

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4RXS \| pdb_00004rxs	Download File View File

The structure of GTP-dTTP-bound SAMHD1

Zhu, C.F., Wei, W., Peng, X., Dong, Y.H., Gong, Y., Yu, X.F.

(2015) Acta Crystallogr D Biol Crystallogr 71: 516-524

Released	2015-03-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 (protein)
Unique Ligands	GTP, MG, TTP