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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Reimer, J.M."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Brevibacillus parabrevis (11)
	Homo sapiens (5)
	Saccharomyces cerevisiae (5)
	Anoxybacillus ayderensis G10 (4)
	Saccharomyces cerevisiae S288C (2)
	Saccharopolyspora erythraea (2)
	Xenopus laevis (1)
	synthetic construct (1)

Taxonomy

	Bacteria (17)
	Eukaryota (10)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (17)
	ELECTRON MICROSCOPY (10)

Polymer Entity Type

	Protein (27)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (4)
	2.5 - 3.0 (6)
	3.0 - 3.5 (1)
	3.5 - 4.0 (5)
	4.0 - 4.5 (4)
	> 4.5 (3)

Release Date

	2015 - 2019 (17)
	2020 - 2024 (10)

Enzyme Classification Name

	Transferases (5)
	Hydrolases (2)

Symmetry Type

	Asymmetric (25)
	Cyclic (2)

SCOP Classification

Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 27 Structures

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5D3K \| pdb_00005d3k	Download File View File

Crystal structure of the thioesterase domain of deoxyerythronolide B synthase

Bergeret, F., Argyropoulos, P., Boddy, C.N., Schmeing, T.M.

(2015) Biochim Biophys Acta 1860: 486-497

Released	2015-12-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Saccharopolyspora erythraea
Macromolecule	Erythronolide synthase, modules 5 and 6 (protein)
Unique Ligands	1PE, CA

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5D3Z \| pdb_00005d3z	Download File View File

Crystal structure of the thioesterase domain of deoxyerythronolide B synthase in complex with a small phosphonate inhibitor

Bergeret, F., Argyropoulos, P., Boddy, C.N., Schmeing, T.M.

(2015) Biochim Biophys Acta 1860: 486-497

Released	2015-12-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharopolyspora erythraea
Macromolecule	Erythronolide synthase, modules 5 and 6 (protein)
Unique Ligands	1PE, 57H, CA

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5ES5 \| pdb_00005es5	Download File View File

Crystal structure of the initiation module of LgrA in the "open" and "closed " adenylation states

Reimer, J.M., Aloise, M.N., Schmeing, T.M.

(2016) Nature 529: 239-242

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Brevibacillus parabrevis
Macromolecule	Linear gramicidin synthetase subunit A (protein)
Unique Ligands	SO4

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5ES6 \| pdb_00005es6	Download File View File

Crystal structure of the first two domains of the initiation module of LgrA

Reimer, J.M., Aloise, M.N., Schmeing, T.M.

(2016) Nature 529: 239-242

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Brevibacillus parabrevis
Macromolecule	Linear gramicidin synthase subunit A (protein)
Unique Ligands	FMT

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5ES7 \| pdb_00005es7	Download File View File

Crystal structure of the F-A domains of the LgrA initiation module soaked with FON, AMPcPP, and valine.

Reimer, J.M., Aloise, M.N., Schmeing, T.M.

(2016) Nature 529: 239-242

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.805 Å
Organisms	Brevibacillus parabrevis
Macromolecule	Linear gramicidin synthetase subunit A (protein)
Unique Ligands	APC, FON, VAL

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5ES8 \| pdb_00005es8	Download File View File

Crystal structure of the initiation module of LgrA in the thiolation state

Reimer, J.M., Aloise, M.N., Schmeing, T.M.

(2016) Nature 529: 239-242

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.547 Å
Organisms	Brevibacillus parabrevis
Macromolecule	Linear gramicidin synthetase subunit A (protein)
Unique Ligands	5S4

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5ES9 \| pdb_00005es9	Download File View File

Crystal structure of the LgrA initiation module in the formylation state

Reimer, J.M., Aloise, M.N., Schmeing, T.M.

(2016) Nature 529: 239-242

Released	2016-01-20
Method	X-RAY DIFFRACTION 3.77 Å
Organisms	Brevibacillus parabrevis
Macromolecule	Linear gramicidin synthetase subunit A (protein)
Unique Ligands	PNS

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5JNF \| pdb_00005jnf	Download File View File

Crystal structure of the LgrA initiation module excluding the Asub domain: F-A-delta-sub

Reimer, J.M., Aloise, M.N., Schmeing, T.M.

(2016) Acta Crystallogr D Biol Crystallogr 72: 1130-1136

Released	2016-10-12
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Brevibacillus parabrevis
Macromolecule	Linear gramicidin synthase subunit A (protein)
Unique Ligands	FMT

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6CI2 \| pdb_00006ci2	Download File View File

Crystal structure of the formyltransferase PseJ from Anoxybacillus kamchatkensis

Reimer, J.M., Jiang, J., Harb, I., Schmeing, T.M.

(2018) ACS Chem Biol 13: 3161-3172

Released	2018-10-17
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Anoxybacillus ayderensis G10
Macromolecule	formyltransferase PseJ (protein)
Unique Ligands	MES, SO4

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6CI4 \| pdb_00006ci4	Download File View File

Crystal structure of the formyltransferase PseJ from Anoxybacillus kamchatkensis soaked with UDP-4-amino-4,6-dideoxy-L-AltNAc

Harb, I., Reimer, J.M., Schmeing, T.M.

(2018) ACS Chem Biol 13: 3161-3172

Released	2018-10-17
Method	X-RAY DIFFRACTION 1.82406793237 Å
Organisms	Anoxybacillus ayderensis G10
Macromolecule	formyltransferase PseJ (protein)
Unique Ligands	F5P

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6CI5 \| pdb_00006ci5	Download File View File

Crystal structure of the formyltransferase PseJ from Anoxybacillus kamchatkensis in complex with UDP-4,6-dideoxy-4-formamido-L-AltNAc and tetrahydrofolate

Reimer, J.M., Harb, I., Schmeing, T.M.

(2018) ACS Chem Biol 13: 3161-3172

Released	2018-10-17
Method	X-RAY DIFFRACTION 2.00003052726 Å
Organisms	Anoxybacillus ayderensis G10
Macromolecule	formyltransferase PseJ (protein)
Unique Ligands	1YJ, F5G, SO4

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6EDK \| pdb_00006edk	Download File View File

Crystal structure of the formyltransferase PseJ from Anoxybacillus kamchatkensis with N10-formyltetrahydrofolate

Reimer, J.M., Harb, I., Schmeing, T.M.

(2018) ACS Chem Biol 13: 3161-3172

Released	2018-10-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Anoxybacillus ayderensis G10
Macromolecule	Formyltransferase PseJ (protein)
Unique Ligands	1YA, MES, SO4

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6MFW \| pdb_00006mfw	Download File View File

Crystal structure of a 4-domain construct of LgrA in the substrate donation state

Reimer, J.M., Eivaskhani, M., Schmeing, T.M.

(2019) Science 366:

Released	2019-11-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Brevibacillus parabrevis
Macromolecule	Linear gramicidin synthase subunit A (protein)
Unique Ligands	APC, FON, JQG, MG, PO4, VAL

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6MFX \| pdb_00006mfx	Download File View File

Crystal structure of a 4-domain construct of a mutant of LgrA in the substrate donation state

Reimer, J.M., Eivaskhani, M., Schmeing, T.M.

(2019) Science 366:

Released	2019-11-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Brevibacillus parabrevis
Macromolecule	Linear gramicidin synthase subunit A (protein)
Unique Ligands	9EF, APC, VAL

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6MFY \| pdb_00006mfy	Download File View File

Crystal structure of a 5-domain construct of LgrA in the substrate donation state

Reimer, J.M., Eivaskhani, M., Harb, I., Schmeing, T.M.

(2019) Science 366:

Released	2019-11-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Brevibacillus parabrevis
Macromolecule	Linear gramicidin synthase subunit A (protein)
Unique Ligands	PNS, PO4

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6MFZ \| pdb_00006mfz	Download File View File

Crystal structure of dimodular LgrA in a condensation state

Reimer, J.M., Eivaskhani, M., Harb, I., Schmeing, T.M.

(2019) Science 366:

Released	2019-11-20
Method	X-RAY DIFFRACTION 6 Å
Organisms	Brevibacillus parabrevis
Macromolecule	Linear gramicidin synthase subunit A (protein)
Unique Ligands	PNS

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6MG0 \| pdb_00006mg0	Download File View File

Crystal structure of a 5-domain construct of LgrA in the thiolation state

Reimer, J.M., Eivaskhani, M., Harb, I., Schmeing, T.M.

(2019) Science 366:

Released	2019-11-20
Method	X-RAY DIFFRACTION 6 Å
Organisms	Brevibacillus parabrevis
Macromolecule	Linear gramicidin synthase subunit A (protein)
Unique Ligands	DG9

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6VZ4 \| pdb_00006vz4	Download File View File

Cryo-EM structure of Sth1-Arp7-Arp9-Rtt102 bound to the nucleosome in ADP Beryllium Fluoride state

Leschziner, A.E., Baker, R.W.

(2021) Nat Struct Mol Biol 28: 71-80

Released	2020-12-02
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae S288C Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 2
Unique Ligands	ADP, ATP, BEF, MG

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6VZG \| pdb_00006vzg	Download File View File

Cryo-EM structure of Sth1-Arp7-Arp9-Rtt102

Leschziner, A.E., Baker, R.W.

(2021) Nat Struct Mol Biol 28: 71-80

Released	2020-12-02
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae S288C
Macromolecule	Actin-like protein ARP9 (protein) Actin-related protein 7 (protein) Nuclear protein STH1/NPS1 (protein) Regulator of Ty1 transposition protein 102 (protein)
Unique Ligands	ATP

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7MGM \| pdb_00007mgm	Download File View File

Structure of yeast cytoplasmic dynein with AAA3 Walker B mutation bound to Lis1

Lahiri, I., Reimer, J.M., Leschziner, A.E.

(2022) Elife 11:

Released	2022-01-19
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Nuclear distribution protein PAC1 (protein) dynein AAA3-WalkerB mutant (E2488Q) (protein)
Unique Ligands	ADP, ATP, MG

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8DYU \| pdb_00008dyu	Download File View File

Structure of human cytoplasmic dynein-1 bound to two Lis1 proteins

Reimer, J.M., DeSantis, M., Reck-Peterson, S.L., Leschziner, A.E.

(2023) Elife 12:

Released	2023-02-01
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens
Macromolecule	Cytoplasmic dynein 1 heavy chain 1 (protein) Platelet-activating factor acetylhydrolase IB subunit beta (protein)
Unique Ligands	ADP, ATP

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8DYV \| pdb_00008dyv	Download File View File

Structure of human cytoplasmic dynein-1 bound to one Lis1

Reimer, J.M., DeSantis, M., Reck-Peterson, S.L., Leschziner, A.E.

(2023) Elife 12:

Released	2023-02-01
Method	ELECTRON MICROSCOPY 3.97 Å
Organisms	Homo sapiens
Macromolecule	Cytoplasmic dynein 1 heavy chain 1 (protein) Platelet-activating factor acetylhydrolase IB subunit beta (protein)
Unique Ligands	ADP, ATP

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8DZZ \| pdb_00008dzz	Download File View File

Cryo-EM structure of chi dynein bound to Lis1

Reimer, J.M., Lahiri, I., Leschziner, A.E.

(2023) Nat Struct Mol Biol 30: 1357-1364

Released	2023-08-30
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Dynein heavy chain, cytoplasmic (protein) Nuclear distribution protein PAC1 (protein)
Unique Ligands	ADP, ATP

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8E00 \| pdb_00008e00	Download File View File

Symmetry expansion of yeast cytoplasmic dynein-1 bound to Lis1 in the chi conformation.

Reimer, J.M., Lahiri, I., Leschziner, A.E.

(2023) Nat Struct Mol Biol 30: 1357-1364

Released	2023-08-30
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Dynein heavy chain, cytoplasmic (protein) Nuclear distribution protein PAC1 (protein)
Unique Ligands	ADP, ATP

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8E04 \| pdb_00008e04	Download File View File

Structure of monomeric LRRK1

Reimer, J.M., Mathea, S., Chatterjee, D., Knapp, S., Leschziner, A.E.

(2023) Nat Struct Mol Biol 30: 1735-1745

Released	2023-08-30
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Leucine-rich repeat serine/threonine-protein kinase 1 (protein)
Unique Ligands	GDP

1 to 25 of 27 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5D3K | pdb_00005d3k

5D3Z | pdb_00005d3z

5ES5 | pdb_00005es5

5ES6 | pdb_00005es6

5ES7 | pdb_00005es7

5ES8 | pdb_00005es8

5ES9 | pdb_00005es9

5JNF | pdb_00005jnf

6CI2 | pdb_00006ci2

6CI4 | pdb_00006ci4

6CI5 | pdb_00006ci5

6EDK | pdb_00006edk

6MFW | pdb_00006mfw

6MFX | pdb_00006mfx

6MFY | pdb_00006mfy

6MFZ | pdb_00006mfz

6MG0 | pdb_00006mg0

6VZ4 | pdb_00006vz4

6VZG | pdb_00006vzg

7MGM | pdb_00007mgm

8DYU | pdb_00008dyu

8DYV | pdb_00008dyv

8DZZ | pdb_00008dzz

8E00 | pdb_00008e00

8E04 | pdb_00008e04