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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yadav, A."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Homo sapiens (5)
	Phocaeicola plebeius (3)
	Streptomyces virginiae (1)

Taxonomy

	Eukaryota (5)
	Bacteria (4)

Experimental Method

	X-RAY DIFFRACTION (6)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (1)
	3.0 - 3.5 (3)

Release Date

	2010 - 2014 (3)
	2020 - 2024 (6)

Enzyme Classification Name

	Hydrolases (3)
	Transferases (2)

Membrane Protein Annotation

	PDBTM (3)
	mpstruc (3)

Symmetry Type

	Asymmetric (3)
	Cyclic (6)

AllSelected

1 to 9 of 9 Structures

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4AK5 \| pdb_00004ak5	Download File View File

Native crystal structure of BpGH117

Hehemann, J.H., Smyth, L., Yadav, A., Vocadlo, D.J., Boraston, A.B.

(2012) J Biological Chem 287: 13985

Released	2012-03-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Phocaeicola plebeius
Macromolecule	ANHYDRO-ALPHA-L-GALACTOSIDASE (protein)
Unique Ligands	CL, EDO, MG

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4AK6 \| pdb_00004ak6	Download File View File

BpGH117_H302E mutant glycoside hydrolase

Hehemann, J.H., Smyth, L., Yadav, A., Vocadlo, D.J., Boraston, A.B.

(2012) J Biological Chem 287: 13985

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Phocaeicola plebeius
Macromolecule	ANHYDRO-ALPHA-L-GALACTOSIDASE (protein)
Unique Ligands	MG

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4AK7 \| pdb_00004ak7	Download File View File

Crystal structure of BpGH117_E303Q in complex with neoagarobiose

Hehemann, J.H., Smyth, L., Yadav, A., Vocadlo, D.J., Boraston, A.B.

(2012) J Biological Chem 287: 13985

Released	2012-03-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Phocaeicola plebeius
Macromolecule	ANHYDRO-ALPHA-L-GALACTOSIDASE (protein)
Unique Ligands	47N, ACT, CA, CL, EDO, MG

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8T3P \| pdb_00008t3p	Download File View File

Crystal structure of MonC1 (a flavin-dependent monooxygenase)

Wang, Q., Mathews, I.I., Kim, C.Y.

(2023) Nat Commun 14: 6273-6273

Released	2023-11-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces virginiae
Macromolecule	MonCI (protein)
Unique Ligands	CL, FAD

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8VW4 \| pdb_00008vw4	Download File View File

Crystal structure of Cbl-b TKB bound to compound 26

Yu, C., Murray, J., Hsu, P.L.

(2024) ACS Med Chem Lett 15: 864-872

Released	2024-07-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase CBL-B (protein)
Unique Ligands	A1AEG, GOL, MG, PEG

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8VW5 \| pdb_00008vw5	Download File View File

Crystal structure of Cbl-b TKB bound to compound 2

Yu, C., Murray, J., Hsu, P.L.

(2024) ACS Med Chem Lett 15: 864-872

Released	2024-07-03
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase CBL-B (protein)
Unique Ligands	A1AD4, CA, MG

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8WBY \| pdb_00008wby	Download File View File

Cryo-EM structure of ACE2-B0AT1 complex with JX98

Yan, R., Hu, Z., Dai, L.

(2024) Nat Commun 15: 7224-7224

Released	2024-09-11
Method	ELECTRON MICROSCOPY 3.18 Å
Organisms	Homo sapiens
Macromolecule	Angiotensin-converting enzyme 2 (protein) Sodium-dependent neutral amino acid transporter B(0)AT1 (protein)
Unique Ligands	NAG, WM8
Unique branched monosaccharides	NAG

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8WBZ \| pdb_00008wbz	Download File View File

Cryo-EM structure of ACE2-B0AT1 complex with JX225

Yan, R., Hu, Z., Dai, L.

(2024) Nat Commun 15: 7224-7224

Released	2024-09-11
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Angiotensin-converting enzyme 2 (protein) Sodium-dependent neutral amino acid transporter B(0)AT1 (protein)
Unique Ligands	NAG, XF0
Unique branched monosaccharides	NAG

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8WM3 \| pdb_00008wm3	Download File View File

Cryo-EM structure of ACE2-SIT1 complex with tiagabine

Yan, R., Hu, Z., Dai, L., Zhang, T.

(2024) J Biological Chem 300: 107687-107687

Released	2024-09-25
Method	ELECTRON MICROSCOPY 3.34 Å
Organisms	Homo sapiens
Macromolecule	Angiotensin-converting enzyme 2 (protein) Sodium- and chloride-dependent transporter XTRP3 (protein)
Unique Ligands	NAG, TGI
Unique branched monosaccharides	NAG

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4AK5 | pdb_00004ak5

Native crystal structure of BpGH117

4AK6 | pdb_00004ak6

BpGH117_H302E mutant glycoside hydrolase

4AK7 | pdb_00004ak7

Crystal structure of BpGH117_E303Q in complex with neoagarobiose

8T3P | pdb_00008t3p

Crystal structure of MonC1 (a flavin-dependent monooxygenase)

8VW4 | pdb_00008vw4

Crystal structure of Cbl-b TKB bound to compound 26

8VW5 | pdb_00008vw5

Crystal structure of Cbl-b TKB bound to compound 2

8WBY | pdb_00008wby

Cryo-EM structure of ACE2-B0AT1 complex with JX98

8WBZ | pdb_00008wbz

Cryo-EM structure of ACE2-B0AT1 complex with JX225

8WM3 | pdb_00008wm3

Cryo-EM structure of ACE2-SIT1 complex with tiagabine

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

4AK5 | pdb_00004ak5

4AK6 | pdb_00004ak6

4AK7 | pdb_00004ak7

8T3P | pdb_00008t3p

8VW4 | pdb_00008vw4

8VW5 | pdb_00008vw5

8WBY | pdb_00008wby

8WBZ | pdb_00008wbz

8WM3 | pdb_00008wm3