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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = DMS

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Search Summary

This query matches 5,344 Structures.

Refinements

Structure Determination Methodology

experimental (5,344)

Scientific Name of Source Organism

	Homo sapiens (2,054)
	Severe acute respiratory syndrome coronavirus 2 (838)
	Coxsackievirus A16 (261)
	Cryphonectria parasitica (218)
	synthetic construct (201)
	Mus musculus (136)
	Chikungunya virus (133)
	Bacillus thermoproteolyticus (103)
	Zika virus (101)
	Bos taurus (96)

More...

Taxonomy

	Eukaryota (2,933)
	Riboviria (1,580)
	Bacteria (812)
	other sequences (201)
	Duplodnaviria (10)
	Archaea (9)
	Monodnaviria (4)
	unclassified sequences (4)
	Varidnaviria (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (5,337)
	ELECTRON MICROSCOPY (4)
	ELECTRON CRYSTALLOGRAPHY (3)

Polymer Entity Type

	Protein (5,341)
	DNA (8)
	RNA (5)

Refinement Resolution (Å)

	0.5 - 1.0 (38)
	1.0 - 1.5 (1,502)
	1.5 - 2.0 (2,661)
	2.0 - 2.5 (916)
	2.5 - 3.0 (198)
	3.0 - 3.5 (27)
	3.5 - 4.0 (2)

Release Date

	1980 - 1984 (1)
	1990 - 1994 (6)
	1995 - 1999 (14)
	2000 - 2004 (57)
	2005 - 2009 (137)
	2010 - 2014 (587)
	2015 - 2019 (1,191)
	2020 - 2024 (3,073)
	2025 - 2029 (278)

Enzyme Classification Name

	Hydrolases (2,975)
	Transferases (920)
	Lyases (319)
	Oxidoreductases (251)
	Ligases (86)
	Isomerases (39)
	Translocases (5)

Membrane Protein Annotation

	PDBTM (19)
	MemProtMD (14)
	mpstruc (12)
	OPM (13)

Symmetry Type

	Asymmetric (3,511)
	Cyclic (1,693)
	Dihedral (188)
	Octahedral (9)
	Icosahedral (1)

SCOP Classification

	All beta proteins (997)
	Alpha and beta proteins (a+b) (701)
	Alpha and beta proteins (a/b) (470)
	Artifacts (360)
	All alpha proteins (284)
	Multi-domain proteins (alpha and beta) (68)
	Membrane and cell surface proteins and peptides (12)
	Small proteins (43)
	Designed proteins (2)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 5,344 Structures

Page 1 of 214

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1BJU \| pdb_00001bju	Download File View File

BETA-TRYPSIN COMPLEXED WITH ACPU

Presnell, S., Patil, G., Mura, C., Jude, K., Conley, J., Kam, C., Bertrand, J., Powers, J., Williams, L.

(1998) Biochemistry 37: 17068-17081

Released	1998-12-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	BETA-TRYPSIN (protein)
Unique Ligands	CA, DMS, GP6, SO4

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1BJV \| pdb_00001bjv	Download File View File

BETA-TRYPSIN COMPLEXED WITH APPU

Presnell, S., Patil, G., Mura, C., Jude, K., Conley, J., Kam, C., Bertrand, J., Powers, J., Williams, L.

(1998) Biochemistry 37: 17068-17081

Released	1998-12-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	BETA-TRYPSIN (protein)
Unique Ligands	CA, DMS, GP8, SO4

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1C1P \| pdb_00001c1p	Download File View File

RECRUITING ZINC TO MEDIATE POTENT, SPECIFIC INHIBITION OF SERINE PROTEASES

Katz, B.A., Luong, C.

(1998) Nature 391: 608-612

Released	2000-07-26
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Bos taurus
Macromolecule	TRYPSIN (protein)
Unique Ligands	BAI, CA, DMS, MG, SO4

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1C1R \| pdb_00001c1r	Download File View File

RECRUITING ZINC TO MEDIATE POTENT, SPECIFIC INHIBITION OF SERINE PROTEASES

Katz, B.A., Luong, C.

(1998) Nature 391: 608-612

Released	2000-07-26
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Bos taurus
Macromolecule	TRYPSIN (protein)
Unique Ligands	BAI, CA, DMS, MG, SO4, ZN

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1C2F \| pdb_00001c2f	Download File View File

RECRUITING ZINC TO MEDIATE POTENT, SPECIFIC INHIBITION OF SERINE PROTEASES

Katz, B.A., Luong, C.

(1998) Nature 391: 608-612

Released	2000-07-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bos taurus
Macromolecule	TRYPSIN (protein)
Unique Ligands	BAH, CA, DMS, MG, ZN

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1C2G \| pdb_00001c2g	Download File View File

RECRUITING ZINC TO MEDIATE POTENT, SPECIFIC INHIBITION OF SERINE PROTEASES

Katz, B.A., Luong, C.

(1998) Nature 391: 608-612

Released	2000-07-26
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Bos taurus
Macromolecule	TRYPSIN (protein)
Unique Ligands	BAH, CA, DMS, MG, ZN

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1C2I \| pdb_00001c2i	Download File View File

RECRUITING ZINC TO MEDIATE POTENT, SPECIFIC INHIBITION OF SERINE PROTEASES

Katz, B.A., Luong, C.

(1998) Nature 391: 608-612

Released	2000-07-26
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Bos taurus
Macromolecule	TRYPSIN (protein)
Unique Ligands	BAK, CA, CL, DMS, ZN

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1D7H \| pdb_00001d7h	Download File View File

FKBP COMPLEXED WITH DMSO

Burkhard, P., Taylor, P., Walkinshaw, M.D.

(2000) J Mol Biology 295: 953-962

Released	1999-10-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (FK506-BINDING PROTEIN) (protein)
Unique Ligands	DMS, NH4, SO4

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1DP0 \| pdb_00001dp0	Download File View File

E. COLI BETA-GALACTOSIDASE AT 1.7 ANGSTROM

Juers, D.H., Jacobson, R.H., Wigley, D., Zhang, X.J., Huber, R.E., Tronrud, D.E., Matthews, B.W.

(2000) Protein Sci 9: 1685-1699

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	BETA-GALACTOSIDASE (protein)
Unique Ligands	DMS, MG, NA

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1FJ3 \| pdb_00001fj3	Download File View File

THERMOLYSIN (50% ACETONE SOAKED)

English, A.C., Groom, C.R., Hubbard, R.E.

(2001) Protein Eng 14: 47-59

Released	2001-04-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	ACN, CA, DMS, ZN

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1FJO \| pdb_00001fjo	Download File View File

THERMOLYSIN (60% ACETONE SOAKED CRYSTALS)

English, A.C., Groom, C.R., Hubbard, R.E.

(2001) Protein Eng 14: 47-59

Released	2001-04-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	ACN, CA, DMS, ZN

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1FJQ \| pdb_00001fjq	Download File View File

THERMOLYSIN (70% ACETONE SOAKED CRYSTALS)

English, A.C., Groom, C.R., Hubbard, R.E.

(2001) Protein Eng 14: 47-59

Released	2001-04-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	ACN, CA, DMS, ZN

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1FJT \| pdb_00001fjt	Download File View File

THERMOLYSIN (50% ACETONITRILE SOAKED CRYSTALS)

English, A.C., Groom, C.R., Hubbard, R.E.

(2001) Protein Eng 14: 47-59

Released	2001-04-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	CA, DMS, LYS, VAL, ZN

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1FJU \| pdb_00001fju	Download File View File

THERMOLYSIN (80% ACETONITRILE SOAKED CRYSTALS)

English, A.C., Groom, C.R., Hubbard, R.E.

(2001) Protein Eng 14: 47-59

Released	2001-04-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	CA, CCN, DMS, ZN

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1FJV \| pdb_00001fjv	Download File View File

THERMOLYSIN (60% ACETONITRILE SOAKED CRYSTALS)

English, A.C., Groom, C.R., Hubbard, R.E.

(2001) Protein Eng 14: 47-59

Released	2001-04-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	CA, DMS, ZN

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1FJW \| pdb_00001fjw	Download File View File

THERMOLYSIN (50 MM PHENOL SOAKED)

English, A.C., Groom, C.R., Hubbard, R.E.

(2001) Protein Eng 14: 47-59

Released	2001-04-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	CA, DMS, IPH, ZN

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1GHG \| pdb_00001ghg	Download File View File

CRYSTAL STRUCTURE OF VANCOMYCIN AGLYCON

Kaplan, J., Korty, B.D., Axelsen, P.H., Loll, P.J.

(2001) J Med Chem 44: 1837

Released	2001-02-12
Method	X-RAY DIFFRACTION 0.98 Å
Organisms	Amycolatopsis orientalis
Macromolecule	VANCOMYCIN AGLYCON (protein)
Unique Ligands	ACY, DMS

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1HYT \| pdb_00001hyt	Download File View File

RE-DETERMINATION AND REFINEMENT OF THE COMPLEX OF BENZYLSUCCINIC ACID WITH THERMOLYSIN AND ITS RELATION TO THE COMPLEX WITH CARBOXYPEPTIDASE A

Hausrath, A.C., Matthews, B.W.

(1994) J Biological Chem 269: 18839-18842

Released	1994-07-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	BZS, CA, DMS, ZN

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1INQ \| pdb_00001inq	Download File View File

Structure of Minor Histocompatibility Antigen peptide, H13a, complexed to H2-Db

Ostrov, D.A., Roden, M.M., Shi, W., Palmieri, E., Christianson, G.J., Mendoza, L., Villaflor, G., Tilley, D., Shastri, N., Grey, H., Almo, S.C., Roopenian, D., Nathenson, S.G.

(2002) J Immunol 168: 283-289

Released	2002-03-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	BETA-2 MICROGLOBULIN (protein) H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN (protein) MHC Class I H13a minor histocompatibility peptide (protein)
Unique Ligands	DMS

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1JM0 \| pdb_00001jm0	Download File View File

CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL

Di Costanzo, L., Geremia, S.

(2001) J Am Chem Soc 123: 12749-12757

Released	2002-01-16
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	PROTEIN (FOUR-HELIX BUNDLE MODEL) (protein)
Unique Ligands	DMS, MN

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1JMB \| pdb_00001jmb	Download File View File

CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL

Di Costanzo, L., Geremia, S.

(2001) J Am Chem Soc 123: 12749-12757

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	PROTEIN (FOUR-HELIX BUNDLE MODEL) (protein)
Unique Ligands	DMS, MN

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1JYN \| pdb_00001jyn	Download File View File

E. COLI (lacZ) BETA-GALACTOSIDASE (E537Q) IN COMPLEX WITH LACTOSE

Juers, D.H., Matthews, B.W.

(2001) Biochemistry 40: 14781-14794

Released	2001-12-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	Beta-Galactosidase (protein)
Unique Ligands	DMS, MG, NA
Unique branched monosaccharides	BGC, GAL