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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 10,851 Structures.

Refinements

Structure Determination Methodology

	computational (6,029)
	experimental (4,822)

CSM Source Database

AlphaFoldDB (6,029)

pLDDT Global Quality Score

	< 50.0 (26)
	50.0 - 70.0 (163)
	70.0 - 90.0 (2,079)
	> 90.0 (3,761)

Scientific Name of Source Organism

	Escherichia coli K-12 (9,042)
	Escherichia coli str. K-12 substr. DH10B (789)
	Escherichia coli BW2952 (779)
	Escherichia coli (287)
	synthetic construct (258)
	Homo sapiens (162)
	Thermus thermophilus HB8 (124)
	Escherichia coli str. K-12 substr. MG1655 (97)
	Mus musculus (52)
	Escherichia coli str. K-12 substr. MC4100 (44)

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Taxonomy

	Bacteria (10,851)
	Eukaryota (354)
	other sequences (260)
	Duplodnaviria (55)
	Riboviria (14)
	Archaea (12)
	Monodnaviria (11)
	unclassified sequences (11)
	Eukaryota (eukaryotes) (4)
	Varidnaviria (1)

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Experimental Method

	X-RAY DIFFRACTION (3,855)
	ELECTRON MICROSCOPY (792)
	SOLUTION NMR (170)
	NEUTRON DIFFRACTION (3)
	SOLID-STATE NMR (3)
	SOLUTION SCATTERING (3)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (10,846)
	RNA (538)
	DNA (428)
	NA-hybrid (3)

Refinement Resolution (Å)

	0.5 - 1.0 (11)
	1.0 - 1.5 (285)
	1.5 - 2.0 (1,251)
	2.0 - 2.5 (1,153)
	2.5 - 3.0 (815)
	3.0 - 3.5 (585)
	3.5 - 4.0 (285)
	4.0 - 4.5 (117)
	> 4.5 (147)

Release Date

	1985 - 1989 (1)
	1990 - 1994 (12)
	1995 - 1999 (91)
	2000 - 2004 (102)
	2005 - 2009 (554)
	2010 - 2014 (1,372)
	2015 - 2019 (1,234)
	2020 - 2024 (7,435)
	2025 - 2029 (50)

Enzyme Classification Name

	Transferases (1,786)
	Hydrolases (1,678)
	Oxidoreductases (999)
	Lyases (486)
	Isomerases (353)
	Ligases (327)
	Translocases (230)

Membrane Protein Annotation

	PDBTM (526)
	MemProtMD (417)
	mpstruc (386)
	OPM (301)

Symmetry Type

	Asymmetric (9,017)
	Cyclic (1,498)
	Dihedral (486)
	Octahedral (39)
	Helical (11)
	Tetrahedral (8)
	Icosahedral (3)

SCOP Classification

	Alpha and beta proteins (a/b) (1,075)
	All beta proteins (369)
	Alpha and beta proteins (a+b) (418)
	All alpha proteins (257)
	Artifacts (352)
	Multi-domain proteins (alpha and beta) (151)
	Membrane and cell surface proteins and peptides (119)
	Small proteins (30)
	Coiled coil proteins (6)
	Peptides (4)

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AllSelected

1 to 25 of 10,851 Structures

Page 1 of 435

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11AS \| pdb_000011as	Download File View File

ASPARAGINE SYNTHETASE MUTANT C51A, C315A COMPLEXED WITH L-ASPARAGINE

Nakatsu, T., Kato, H., Oda, J.

(1998) Nat Struct Biol 5: 15-19

Released	1998-12-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	ASPARAGINE SYNTHETASE (protein)
Unique Ligands	ASN

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12AS \| pdb_000012as	Download File View File

ASPARAGINE SYNTHETASE MUTANT C51A, C315A COMPLEXED WITH L-ASPARAGINE AND AMP

Nakatsu, T., Kato, H., Oda, J.

(1998) Nat Struct Biol 5: 15-19

Released	1998-12-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli K-12
Macromolecule	ASPARAGINE SYNTHETASE (protein)
Unique Ligands	AMP, ASN

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1A0F \| pdb_00001a0f	Download File View File

CRYSTAL STRUCTURE OF GLUTATHIONE S-TRANSFERASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTATHIONESULFONIC ACID

Nishida, M., Harada, S., Noguchi, S., Inoue, H., Takahashi, K., Satow, Y.

(1998) J Mol Biology 281: 135-147

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	GLUTATHIONE S-TRANSFERASE (protein)
Unique Ligands	GTS

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1A3A \| pdb_00001a3a	Download File View File

CRYSTAL STRUCTURE OF IIA MANNITOL FROM ESCHERICHIA COLI

Van Montfort, R.L.M., Pijning, T., Kalk, K.H., Hangyi, I., Kouwijzer, M.L.C.E., Robillard, G.T., Dijkstra, B.W.

(1998) Structure 6: 377-388

Released	1998-08-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	MANNITOL-SPECIFIC EII (protein)

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1A5T \| pdb_00001a5t	Download File View File

CRYSTAL STRUCTURE OF THE DELTA PRIME SUBUNIT OF THE CLAMP-LOADER COMPLEX OF ESCHERICHIA COLI DNA POLYMERASE III

Guenther, B., Onrust, R., Sali, A., O'Donnell, M., Kuriyan, J.

(1997) Cell 91: 335-345

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli K-12
Macromolecule	DELTA PRIME (protein)
Unique Ligands	ZN

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1A87 \| pdb_00001a87	Download File View File

COLICIN N

Vetter, I.R., Parker, M.W., Tucker, A.D., Lakey, J.H., Pattus, F., Tsernoglou, D.

(1998) Structure 6: 863-874

Released	1999-04-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli K-12
Macromolecule	COLICIN N (protein)

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1AA3 \| pdb_00001aa3	Download File View File

C-TERMINAL DOMAIN OF THE E. COLI RECA, NMR, MINIMIZED AVERAGE STRUCTURE

Aihara, H., Ito, Y., Kurumizaka, H., Terada, T., Yokoyama, S., Shibata, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1997) J Mol Biology 274: 213-221

Released	1997-07-23
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	RECA (protein)

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1ACM \| pdb_00001acm	Download File View File

ARGININE 54 IN THE ACTIVE SITE OF ESCHERICHIA COLI ASPARTATE TRANSCARBAMOYLASE IS CRITICAL FOR CATALYSIS: A SITE-SPECIFIC MUTAGENESIS, NMR AND X-RAY CRYSTALLOGRAPHY STUDY

Stevens, R.C., Kantrowitz, E.R., Lipscomb, W.N.

(1992) Protein Sci 1: 1435-1446

Released	1992-07-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli (strain K12)
Macromolecule	ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN (protein) ASPARTATE CARBAMOYLTRANSFERASE, CATALYTIC CHAIN (protein)
Unique Ligands	PAL, ZN

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1AHG \| pdb_00001ahg	Download File View File

ASPARTATE AMINOTRANSFERASE HEXAMUTANT

Malashkevich, V.N., Jansonius, J.N.

(1995) Nat Struct Biol 2: 548-553

Released	1995-09-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, TYR

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1AKO \| pdb_00001ako	Download File View File

EXONUCLEASE III FROM ESCHERICHIA COLI

Mol, C.D., Kuo, C.-F., Thayer, M.M., Cunningham, R.P., Tainer, J.A.

(1995) Nature 374: 381-386

Released	1997-08-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	EXONUCLEASE III (protein)

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1ANF \| pdb_00001anf	Download File View File

MALTODEXTRIN BINDING PROTEIN WITH BOUND MALTOSE

Spurlino, J.C., Quiocho, F.A.

(1997) Structure 5: 997-1015

Released	1997-12-24
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Escherichia coli K-12
Macromolecule	MALTODEXTRIN-BINDING PROTEIN (protein)
Unique branched monosaccharides	GLC

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1AOY \| pdb_00001aoy	Download File View File

N-TERMINAL DOMAIN OF ESCHERICHIA COLI ARGININE REPRESSOR NMR, 23 STRUCTURES

Sunnerhagen, M., Nilges, M., Otting, G.

(1997) Nat Struct Biol 4: 819-826

Released	1997-09-17
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	ARGININE REPRESSOR (protein)

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1AQ2 \| pdb_00001aq2	Download File View File

PHOSPHOENOLPYRUVATE CARBOXYKINASE

Tari, L.W., Matte, A., Goldie, H., Delbaere, L.T.J.

(1997) Nat Struct Biol 4: 990-994

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	PHOSPHOENOLPYRUVATE CARBOXYKINASE (protein)
Unique Ligands	ATP, MG, MN, PYR

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1ARZ \| pdb_00001arz	Download File View File

ESCHERICHIA COLI DIHYDRODIPICOLINATE REDUCTASE IN COMPLEX WITH NADH AND 2,6 PYRIDINE DICARBOXYLATE

Scapin, G., Reddy, S.G., Zheng, R., Blanchard, J.S.

(1997) Biochemistry 36: 15081-15088

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12
Macromolecule	DIHYDRODIPICOLINATE REDUCTASE (protein)
Unique Ligands	K, NAI, PDC, PO4

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1AYL \| pdb_00001ayl	Download File View File

PHOSPHOENOLPYRUVATE CARBOXYKINASE

Tari, L.W., Pugazenthi, U., Goldie, H., Delbaere, L.T.J.

(1996) Nat Struct Biol 3: 355-363

Released	1997-01-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	PHOSPHOENOLPYRUVATE CARBOXYKINASE (protein)
Unique Ligands	ATP, MG, OXL

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1AZO \| pdb_00001azo	Download File View File

DNA MISMATCH REPAIR PROTEIN MUTH FROM E. COLI

Yang, W.

(1998) EMBO J 17: 1526-1534

Released	1998-05-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	MUTH (protein)
Unique Ligands	EDO

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1AZY \| pdb_00001azy	Download File View File

STRUCTURAL AND THEORETICAL STUDIES SUGGEST DOMAIN MOVEMENT PRODUCES AN ACTIVE CONFORMATION OF THYMIDINE PHOSPHORYLASE

Pugmire, M.J., Cook, W.J., Jasanoff, A., Walter, M.R., Ealick, S.E.

(1998) J Mol Biology 281: 285-299

Released	1999-01-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli K-12
Macromolecule	THYMIDINE PHOSPHORYLASE (protein)

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1B0A \| pdb_00001b0a	Download File View File

5,10, METHYLENE-TETRAHYDROPHOLATE DEHYDROGENASE/CYCLOHYDROLASE FROM E COLI.

Shen, B.W., Dyer, D., Huang, J.-Y., D'Ari, L., Rabinowitz, J., Stoddard, B.L.

(1999) Protein Sci 8: 1342-1349

Released	1999-06-29
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Escherichia coli K-12
Macromolecule	PROTEIN (FOLD BIFUNCTIONAL PROTEIN) (protein)

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1B3N \| pdb_00001b3n	Download File View File

BETA-KETOACYL CARRIER PROTEIN SYNTHASE AS A DRUG TARGET, IMPLICATIONS FROM THE CRYSTAL STRUCTURE OF A COMPLEX WITH THE INHIBITOR CERULENIN.

Moche, M., Schneider, G., Edwards, P., Dehesh, K., Lindqvist, Y.

(1999) J Biological Chem 274: 6031-6034

Released	1999-04-06
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli K-12
Macromolecule	PROTEIN (KETOACYL ACYL CARRIER PROTEIN SYNTHASE 2) (protein)
Unique Ligands	CER