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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Nguyen, L."

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Search Summary

This query matches 506 Structures.

Refinements

Structure Determination Methodology

experimental (506)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (466)
	Homo sapiens (23)
	metagenome (3)
	Anolis carolinensis (2)
	Arabidopsis thaliana (2)
	Escherichia coli O157:H7 (2)
	Influenza A virus (A/Indiana/10/2011(H3N2)) (2)
	Mycobacterium tuberculosis (2)
	Mycobacterium tuberculosis H37Rv (2)
	Mycolicibacterium smegmatis MC2 155 (2)

More...

Taxonomy

	Riboviria (470)
	Eukaryota (25)
	Bacteria (11)
	unclassified sequences (3)

Experimental Method

	X-RAY DIFFRACTION (502)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

Protein (506)

Refinement Resolution (Å)

	1.0 - 1.5 (59)
	1.5 - 2.0 (350)
	2.0 - 2.5 (84)
	2.5 - 3.0 (9)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (16)
	2015 - 2019 (10)
	2020 - 2024 (475)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (474)
	Transferases (16)
	Ligases (3)
	Lyases (2)

Symmetry Type

	Cyclic (470)
	Asymmetric (32)
	Dihedral (5)

SCOP Classification

	All alpha proteins (9)
	Alpha and beta proteins (a+b) (7)
	All beta proteins (7)
	Artifacts (6)

AllSelected

1 to 25 of 506 Structures

Page 1 of 21

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2QHO \| pdb_00002qho	Download File View File

Crystal structure of the UBA domain from EDD ubiquitin ligase in complex with ubiquitin

Kozlov, G., Gehring, K.

(2007) J Biological Chem 282: 35787-35795

Released	2007-09-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase EDD1 (protein) Ubiquitin (protein)

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3BXY \| pdb_00003bxy	Download File View File

Crystal structure of tetrahydrodipicolinate N-succinyltransferase from E. coli

Kozlov, G., Gehring, K., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2008) FEBS Lett 582: 623-626

Released	2008-01-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli O157:H7
Macromolecule	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (protein)

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3GZH \| pdb_00003gzh	Download File View File

Crystal structure of phosphate-bound adenylosuccinate lyase from E. coli

Kozlov, G., Gehring, K., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 857-861

Released	2009-08-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Adenylosuccinate lyase (protein)
Unique Ligands	NA, PO4

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3KUR \| pdb_00003kur	Download File View File

Crystal structure of the MLLE domain of poly(A)-binding protein

Kozlov, G., Gehring, K.

(2010) J Mol Biology 397: 397-407

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Polyadenylate-binding protein 1 (protein)
Unique Ligands	CL

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3KUS \| pdb_00003kus	Download File View File

Crystal structure of the MLLE domain of poly(A)-binding protein in complex with the binding region of Paip2

Kozlov, G., Gehring, K.

(2010) J Mol Biology 397: 397-407

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	PAIP2 protein (protein) Polyadenylate-binding protein 1 (protein)
Unique Ligands	EPE, GOL

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3KUT \| pdb_00003kut	Download File View File

Crystal structure of the MLLE domain of poly(A)-binding protein in complex with the binding region of Paip2

Kozlov, G., Gehring, K.

(2010) J Mol Biology 397: 397-407

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	PAIP2 protein (protein) Polyadenylate-binding protein 1 (protein)
Unique Ligands	CL

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3OGI \| pdb_00003ogi	Download File View File

Crystal structure of the Mycobacterium tuberculosis H37Rv EsxOP complex (Rv2346c-Rv2347c)

Arbing, M.A., Chan, S., Zhou, T.T., Ahn, C., Harris, L., Kuo, E., Sawaya, M.R., Cascio, D., Eisenberg, D., Integrated Center for Structure and Function Innovation (ISFI), TB Structural Genomics Consortium (TBSGC)

(2013) PLoS One 8: e81753-e81753

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.549 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Putative ESAT-6-like protein 6 (protein) Putative ESAT-6-like protein 7 (protein)

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3Q4H \| pdb_00003q4h	Download File View File

Crystal structure of the Mycobacterium smegmatis EsxGH complex (MSMEG_0620-MSMEG_0621)

Chan, S., Harris, L., Kuo, E., Ahn, C., Zhou, T.T., Nguyen, L., Shin, A., Sawaya, M.R., Cascio, D., Arbing, M.A., Eisenberg, D., Integrated Center for Structure and Function Innovation (ISFI), TB Structural Genomics Consortium (TBSGC)

(2013) PLoS One 8: e81753-e81753

Released	2011-01-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Low molecular weight protein antigen 7 (protein) Pe family protein (protein)

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3S0M \| pdb_00003s0m	Download File View File

A Structural Element that Modulates Proton-Coupled Electron Transfer in Oxalate Decarboxylase

Saylor, B.T., Reinhardt, L.A., Lu, Z., Shukla, M.S., Cleland, W.W., Allen, K.N., Richards, N.G.J.

(2012) Biochemistry 51: 2911-2920

Released	2012-04-25
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Bacillus subtilis
Macromolecule	Oxalate decarboxylase oxdC (protein)
Unique Ligands	CO3, EDO, MN, PEG

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4ANU \| pdb_00004anu	Download File View File

Complexes of PI3Kgamma with isoform selective inhibitors.

Foster, P.G., Lougheed, J.C.

(2012) J Med Chem 55: 5467

Released	2012-05-09
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT GAMMA ISOFORM (protein)
Unique Ligands	EM7, SO4

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4ANV \| pdb_00004anv	Download File View File

Complexes of PI3Kgamma with isoform selective inhibitors.

Foster, P.G., Lougheed, J.C.

(2012) J Med Chem 55: 5467

Released	2012-05-09
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT GAMMA ISOFORM (protein)
Unique Ligands	751, SO4

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4ANW \| pdb_00004anw	Download File View File

Complexes of PI3Kgamma with isoform selective inhibitors.

Foster, P.G., Lougheed, J.C.

(2012) J Med Chem 55: 5467

Released	2012-05-09
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT GAMMA ISOFORM (protein)
Unique Ligands	O92, SO4

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4ANX \| pdb_00004anx	Download File View File

Complexes of PI3Kgamma with isoform selective inhibitors.

Foster, P.G., Lougheed, J.C.

(2012) J Med Chem 55: 5467

Released	2012-05-09
Method	X-RAY DIFFRACTION 2.73 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT GAMMA ISOFORM (protein)
Unique Ligands	534

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4GZR \| pdb_00004gzr	Download File View File

Crystal structure of the Mycobacterium tuberculosis H37Rv EsxOP (Rv2346c-Rv2347c) complex in space group C2221

Arbing, M.A., Chan, S., He, Q., Harris, L., Zhou, T.T., Kuo, E., Ahn, C.J., Eisenberg, D., TB Structural Genomics Consortium (TBSGC), Integrated Center for Structure and Function Innovation (ISFI)

(2013) PLoS One 8: e81753-e81753

Released	2012-09-26
Method	X-RAY DIFFRACTION 2.553 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ESAT-6-like protein 6 (protein) ESAT-6-like protein 7 (protein)
Unique Ligands	SO4

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4I0X \| pdb_00004i0x	Download File View File

Crystal structure of the Mycobacterum abscessus EsxEF (Mab_3112-Mab_3113) complex

Arbing, M.A., Chan, S., Lu, J., Kuo, E., Harris, L., Eisenberg, D., Integrated Center for Structure and Function Innovation (ISFI), TB Structural Genomics Consortium (TBSGC)

(2013) PLoS One 8: e81753-e81753

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.956 Å
Organisms	Mycobacteroides abscessus ATCC 19977
Macromolecule	ESAT-6-like protein MAB_3112 (protein) ESAT-6-like protein MAB_3113 (protein)
Unique Ligands	BME, GOL, SO4

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4I1F \| pdb_00004i1f	Download File View File

Structure of Parkin-S223P E3 ligase

Lougheed, J.C., Brecht, E., Yao, N.H.

(2013) Nat Commun 4: 1982-1982

Released	2013-06-19
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin (protein)
Unique Ligands	BA, ZN

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4I1H \| pdb_00004i1h	Download File View File

Structure of Parkin E3 ligase

Lougheed, J.C., Brecht, E., Yao, N.H.

(2013) Nat Commun 4: 1982-1982

Released	2013-06-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin (protein)
Unique Ligands	ZN

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4JLF \| pdb_00004jlf	Download File View File

Inhibitor resistant (R220A) substitution in the Mycobacterium tuberculosis beta-lactamase

Hazra, S., Kurz, S., Blanchard, J., Bonomo, R.

(2013) Antimicrob Agents Chemother 57: 6085-6096

Released	2013-10-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Beta-lactamase (protein)
Unique Ligands	PO4

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4QHC \| pdb_00004qhc	Download File View File

Structure of M.Tuberculosis Betalactamase (Blac) with inhibitor having novel mechanism

Hazra, S., Blanchard, J.

(2015) Biochemistry 54: 5657-5664

Released	2015-07-22
Method	X-RAY DIFFRACTION 1.899 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Beta-lactamase (protein)
Unique Ligands	33V, PO4

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4RAK \| pdb_00004rak	Download File View File

Crystal structure of nuclear receptor subfamily 1, group h, member 2 (lxrb) complexed with partial agonist

Nanao, M.

(2015) Bioorg Med Chem Lett 25: 372-377

Released	2014-12-31
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Homo sapiens
Macromolecule	Oxysterols receptor LXR-beta (protein)
Unique Ligands	652, BU1

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4W2R \| pdb_00004w2r	Download File View File

Structure of Hs/AcPRC2 in complex with 5,8-dichloro-2-[(4-methoxy-6-methyl-2-oxo-1,2-dihydropyridin-3-yl)methyl]-7-[(R)-methoxy(oxetan-3-yl)methyl]-3,4-dihydroisoquinolin-1(2H)-one

Gajiwala, K.S., Brooun, A., Liu, W., Deng, Y., Stewart, A.E.

(2018) J Med Chem 61: 650-665

Released	2017-12-27
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Anolis carolinensis Homo sapiens
Macromolecule	Enhancer of zeste 2 polycomb repressive complex 2 subunit (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	CJD, ZN