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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Rohou, A."

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Search Summary

This query matches 128 Structures.

Refinements

Structure Determination Methodology

experimental (128)

Scientific Name of Source Organism

	Homo sapiens (72)
	Saccharomyces cerevisiae (24)
	Escherichia coli K-12 (13)
	Escherichia coli (11)
	synthetic construct (10)
	Saccharomyces cerevisiae S288C (3)
	Thermotoga maritima (3)
	Drosophila melanogaster (2)
	Thermochaetoides thermophila DSM 1495 (2)
	Mammarenavirus lassaense (1)

More...

Taxonomy

	Eukaryota (100)
	Bacteria (27)
	other sequences (10)
	Riboviria (1)

Experimental Method

	ELECTRON MICROSCOPY (91)
	X-RAY DIFFRACTION (33)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (124)
	RNA (63)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (12)
	2.0 - 2.5 (12)
	2.5 - 3.0 (14)
	3.0 - 3.5 (12)
	3.5 - 4.0 (11)
	4.0 - 4.5 (10)
	> 4.5 (48)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (8)
	2010 - 2014 (23)
	2015 - 2019 (34)
	2020 - 2024 (58)

Enzyme Classification Name

	Hydrolases (61)
	Transferases (34)
	Oxidoreductases (24)
	Lyases (20)
	Isomerases (12)
	Ligases (1)

Symmetry Type

	Asymmetric (100)
	Cyclic (14)
	Dihedral (5)
	Octahedral (5)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (20)
	All alpha proteins (10)
	All beta proteins (2)
	Peptides (2)
	Artifacts (5)
	Low resolution protein structures (2)
	Alpha and beta proteins (a/b) (1)
	Small proteins (2)

AllSelected

1 to 25 of 128 Structures

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1C2W \| pdb_00001c2w	Download File View File

23S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION

Brimacombe, R., Mueller, F.

(2000) J Mol Biology 298: 35-59

Released	2000-04-10
Method	ELECTRON MICROSCOPY 7.5 Å
Organisms	Escherichia coli
Macromolecule	23S RIBOSOMAL RNA (nucleic acid)

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1C2X \| pdb_00001c2x	Download File View File

5S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION

Brimacombe, R., Mueller, F.

(2000) J Mol Biology 298: 35-59

Released	2000-04-10
Method	ELECTRON MICROSCOPY 7.5 Å
Organisms	Escherichia coli
Macromolecule	5S RIBOSOMAL RNA (nucleic acid)

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1LS2 \| pdb_00001ls2	Download File View File

Fitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome

Valle, M., Sengupta, J., Swami, N.K., Grassucci, R.A., Burkhardt, N., Nierhaus, K.H., Agrawal, R.K., Frank, J.

(2002) EMBO J 21: 3557-3567

Released	2002-06-26
Method	ELECTRON MICROSCOPY 16.8 Å
Organisms	Escherichia coli Saccharomyces cerevisiae
Macromolecule	Elongation Factor Tu (protein) Phenylalanine transfer RNA (nucleic acid)

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1LU3 \| pdb_00001lu3	Download File View File

Separate Fitting of the Anticodon Loop Region of tRNA (nucleotide 26-42) in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome

Valle, M., Sengupta, J., Swami, N.K., Grassucci, R.A., Burkhardt, N., Nierhaus, K.H., Agrawal, R.K., Frank, J.

(2002) EMBO J 21: 3557-3567

Released	2002-06-26
Method	ELECTRON MICROSCOPY 16.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PHENYLALANINE TRANSFER RNA (nucleic acid)

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1MJ1 \| pdb_00001mj1	Download File View File

FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME

Stark, H., Rodnina, M.V., Wieden, H.-J., Zemlin, F., Wintermeyer, W., Vanheel, M.

(2002) Nat Struct Biol 9: 849-854

Released	2002-11-01
Method	ELECTRON MICROSCOPY 13 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 3

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1ZAV \| pdb_00001zav	Download File View File

Ribosomal Protein L10-L12(NTD) Complex, Space Group P21

Diaconu, M., Kothe, U., Schluenzen, F., Fischer, N., Harms, J.M., Tonevitski, A.G., Stark, H., Rodnina, M.V., Wahl, M.C.

(2005) Cell 121: 991-1004

Released	2005-07-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	50S ribosomal protein L10 (protein) 50S ribosomal protein L7/L12 (protein)

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1ZAW \| pdb_00001zaw	Download File View File

Ribosomal Protein L10-L12(NTD) Complex, Space Group P212121, Form A

Diaconu, M., Kothe, U., Schluenzen, F., Fischer, N., Harms, J.M., Tonevitski, A.G., Stark, H., Rodnina, M.V., Wahl, M.C.

(2005) Cell 121: 991-1004

Released	2005-07-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermotoga maritima
Macromolecule	50S ribosomal protein L10 (protein) 50S ribosomal protein L7/L12 (protein)

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1ZAX \| pdb_00001zax	Download File View File

Ribosomal Protein L10-L12(NTD) Complex, Space Group P212121, Form B

Diaconu, M., Kothe, U., Schluenzen, F., Fischer, N., Harms, J.M., Tonevitski, A.G., Stark, H., Rodnina, M.V., Wahl, M.C.

(2005) Cell 121: 991-1004

Released	2005-07-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermotoga maritima
Macromolecule	50S ribosomal protein L10 (protein) 50S ribosomal protein L7/L12 (protein)

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2AGN \| pdb_00002agn	Download File View File

Fitting of hepatitis C virus internal ribosome entry site domains into the 15 A Cryo-EM map of a HCV IRES-80S ribosome (H. sapiens) complex

Boehringer, D., Thermann, R., Ostareck-Lederer, A., Lewis, J.D., Stark, H.

(2005) Structure 13: 1695-1706

Released	2006-07-25
Method	ELECTRON MICROSCOPY 15 Å
Organisms	synthetic construct
Macromolecule	6 nt A-RNA helix (nucleic acid) HCV IRES DOMAIN II (nucleic acid) HCV IRES IIIABC (nucleic acid) HCV IRES SUB-DOMAIN IIIB (nucleic acid) HCV-1B IRES RNA SUB-DOMAIN IIID (nucleic acid)

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2F9D \| pdb_00002f9d	Download File View File

2.5 angstrom resolution structure of the spliceosomal protein p14 bound to region of SF3b155

Schellenberg, M.J., Edwards, R.A., Ritchie, D.B., Glover, J.N.M., Macmillan, A.M.

(2006) Proc Natl Acad Sci U S A 103: 1266-1271

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Pre-mRNA branch site protein p14 (protein) Splicing factor 3B subunit 1 (protein)

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2F9J \| pdb_00002f9j	Download File View File

3.0 angstrom resolution structure of a Y22M mutant of the spliceosomal protein p14 bound to a region of SF3b155

Schellenberg, M.J., MacMillan, A.M.

(2006) Proc Natl Acad Sci U S A 103: 1266-1271

Released	2006-01-24
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Pre-mRNA branch site protein p14 (protein) Splicing factor 3B subunit 1 (protein)

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2M6N \| pdb_00002m6n	Download File View File

3D solution structure of EMI1 (Early Mitotic Inhibitor 1)

Frye, J.J., Brown, N.G., Petzold, G., Watson, E.R., Royappa, G.R., Nourse, A., Jarvis, M., Kriwacki, R.W., Peters, J., Stark, H., Schulman, B.A.

(2013) Nat Struct Mol Biol 20: 827-835

Released	2013-05-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	F-box only protein 5 (protein)
Unique Ligands	ZN

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2MT5 \| pdb_00002mt5	Download File View File

Isolated Ring domain

Brown, N.G., Watson, E.R., Weissman, F., Royappa, G., Schulman, B., Jarvis, M., Vanderlinden, R., Frye, J.J., Qiao, R., Petzold, G., Peters, J., Stark, H.

(2014) Mol Cell 56: 246-260

Released	2014-10-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 11 (protein)
Unique Ligands	ZN

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2QA5 \| pdb_00002qa5	Download File View File

Crystal structure of Sept2 G-domain

Sirajuddin, M., Wittinghofer, A.

(2007) Nature 449: 311-315

Released	2007-08-07
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	Septin-2 (protein)
Unique Ligands	GDP

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2QAG \| pdb_00002qag	Download File View File

Crystal structure of human septin trimer 2/6/7

Sirajuddin, M.

(2007) Nature 449: 311-315

Released	2007-08-07
Method	X-RAY DIFFRACTION 4 Å
Organisms	Homo sapiens
Macromolecule	Septin-2 (protein) Septin-6 (protein) Septin-7 (protein)
Unique Ligands	GDP, GTP

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3JCR \| pdb_00003jcr	Download File View File

3D structure determination of the humanU4/U6.U5 tri-snRNP complex

Agafonov, D.E., Kastner, B., Dybkov, O., Hofele, R.V., Liu, W.T., Urlaub, H., Luhrmann, R., Stark, H.

(2016) Science 351: 1416-1420

Released	2016-03-09
Method	ELECTRON MICROSCOPY 7 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 26 Unique nucleic acid chains: 3

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3R3L \| pdb_00003r3l	Download File View File

Structure of NP protein from Lassa AV strain

Perbandt, M., Brunotte, L., Gunther, S., Betzel, C.

(2011) J Biological Chem 286: 38748-38756

Released	2011-09-14
Method	X-RAY DIFFRACTION 2.449 Å
Organisms	Mammarenavirus lassaense
Macromolecule	Nucleoprotein (protein)
Unique Ligands	MN, ZN

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4CT1 \| pdb_00004ct1	Download File View File

Human PDK1-PKCzeta Kinase Chimera in Complex with Allosteric Compound PS315 Bound to the PIF-Pocket

Schulze, J.O., Zhang, H., Lopez-Garcia, L.A., Biondi, R.M.

(2014) Chem Biol 21: 754

Released	2014-05-28
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (protein)
Unique Ligands	31S, ATP, DMS, DTD

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4CT2 \| pdb_00004ct2	Download File View File

Human PDK1-PKCzeta Kinase Chimera

Schulze, J.O., Zhang, H., Lopez-Garcia, L.A., Biondi, R.M.

(2014) Chem Biol 21: 754

Released	2014-05-28
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (protein)
Unique Ligands	ATP, DTD, NA

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4F7U \| pdb_00004f7u	Download File View File

The 6S snRNP assembly intermediate

Grimm, C., Pelz, J.P.

(2013) Mol Cell 49: 692-703

Released	2013-01-30
Method	X-RAY DIFFRACTION 1.898 Å
Organisms	Drosophila melanogaster Mus musculus Xenopus laevis
Macromolecule	Unique protein chains: 6
Unique Ligands	P6G

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4FGV \| pdb_00004fgv	Download File View File

Crystal structure of free CRM1 (crystal form 1)

Monecke, T., Neumann, P., Dickmanns, A., Ficner, R.

(2013) Proc Natl Acad Sci U S A 110: 960-965

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.941 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Chromosome region maintenance 1 (CRM1) or Exportin 1 (Xpo1) (protein)

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4HZK \| pdb_00004hzk	Download File View File

Crystal structure of free CRM1 (crystal form 2)

Monecke, T., Neumann, P., Dickmanns, A., Ficner, R.

(2013) Proc Natl Acad Sci U S A 110: 960-965

Released	2013-01-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	CRM1 Nuclear transport receptor (protein)

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4R2Y \| pdb_00004r2y	Download File View File

Crystal structure of APC11 RING domain

Brown, N.G., Watson, E.R., Weissmann, F., Jarvis, M.A., Vanderlinden, R., Grace, C.R.R., Frye, J.J., Dube, P., Qiao, R., Petzold, G., Cho, S.E., Alsharif, O., Bao, J., Zheng, J., Nourse, A., Kurinov, I., Peters, J.M., Stark, H., Schulman, B.A.

(2014) Mol Cell 56: 246-260

Released	2014-10-29
Method	X-RAY DIFFRACTION 1.755 Å
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 11 (protein)
Unique Ligands	ZN

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4V6Y \| pdb_00004v6y	Download File View File

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.

(2013) Nat Struct Mol Biol 20: 1390-1396

Released	2014-07-09
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 6
Unique Ligands	FME, VAL

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4V6Z \| pdb_00004v6z	Download File View File

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)

Blau, C., Bock, L.V., Schroder, G.F., Davydov, I., Fischer, N., Stark, H., Rodnina, M.V., Vaiana, A.C., Grubmuller, H.

(2013) Nat Struct Mol Biol 20: 1390-1396

Released	2014-07-09
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 6
Unique Ligands	FME, VAL

1 to 25 of 128 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1C2W | pdb_00001c2w

1C2X | pdb_00001c2x

1LS2 | pdb_00001ls2

1LU3 | pdb_00001lu3

1MJ1 | pdb_00001mj1

1ZAV | pdb_00001zav

1ZAW | pdb_00001zaw

1ZAX | pdb_00001zax

2AGN | pdb_00002agn

2F9D | pdb_00002f9d

2F9J | pdb_00002f9j

2M6N | pdb_00002m6n

2MT5 | pdb_00002mt5

2QA5 | pdb_00002qa5

2QAG | pdb_00002qag

3JCR | pdb_00003jcr

3R3L | pdb_00003r3l

4CT1 | pdb_00004ct1

4CT2 | pdb_00004ct2

4F7U | pdb_00004f7u

4FGV | pdb_00004fgv

4HZK | pdb_00004hzk

4R2Y | pdb_00004r2y

4V6Y | pdb_00004v6y

4V6Z | pdb_00004v6z