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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ruksenaite, A."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Aphanizomenon flos-aquae 2012/KM1/D3 (4)
	synthetic construct (4)
	Bacillus cereus MSX-D12 (3)
	Candidatus Cloacimonas acidaminovorans (3)
	Homo sapiens (3)
	Allochromatium vinosum (2)
	Escherichia coli (1)
	Shewanella oneidensis MR-1 (1)
	Streptococcus thermophilus (1)

Taxonomy

	Bacteria (13)
	other sequences (4)
	Eukaryota (3)

Experimental Method

	X-RAY DIFFRACTION (10)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

	Protein (16)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (6)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

2020 - 2024 (16)

Enzyme Classification Name

	Hydrolases (10)
	Lyases (3)
	Transferases (3)

Symmetry Type

	Cyclic (7)
	Asymmetric (7)
	Dihedral (2)

AllSelected

1 to 16 of 16 Structures

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7AE2 \| pdb_00007ae2	Download File View File

Crystal structure of HEPN(H107A-Y109F) toxin in complex with MNT antitoxin

Tamulaitiene, G., Sasnauskas, G., Songailiene, I., Juozapaitis, J., Siksnys, V.

(2020) Mol Cell 80: 955-970.e7

Released	2020-12-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aphanizomenon flos-aquae 2012/KM1/D3
Macromolecule	HEPN toxin (protein) MNT ANTITOXIN (protein)

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7AE6 \| pdb_00007ae6	Download File View File

Crystal structure of di-AMPylated HEPN(R102A) toxin

Tamulaitiene, G., Sasnauskas, G., Songailiene, I., Juozapaitis, J., Siksnys, V.

(2020) Mol Cell 80: 955-970.e7

Released	2020-12-30
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Aphanizomenon flos-aquae 2012/KM1/D3
Macromolecule	HEPN toxin (protein)
Unique Ligands	AMP, EDO

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7AE8 \| pdb_00007ae8	Download File View File

Crystal structure of HEPN(R102A) toxin

Tamulaitiene, G., Sasnauskas, G., Songailiene, I., Juozapaitis, J., Siksnys, V.

(2020) Mol Cell 80: 955-970.e7

Released	2020-12-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aphanizomenon flos-aquae 2012/KM1/D3
Macromolecule	HEPN toxin (protein)
Unique Ligands	ACT

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7AE9 \| pdb_00007ae9	Download File View File

Crystal structure of mono-AMPylated HEPN(R46E) toxin in complex with MNT antitoxin

Tamulaitiene, G., Sasnauskas, G., Songailiene, I., Juozapaitis, J., Siksnys, V.

(2020) Mol Cell 80: 955-970.e7

Released	2020-12-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Aphanizomenon flos-aquae 2012/KM1/D3
Macromolecule	HEPN toxin (protein) MNT ANTITOXIN (protein)
Unique Ligands	2DA

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7AER \| pdb_00007aer	Download File View File

Rebuilt and re-refined PDB entry 5yep: tri-AMPylated Shewanella oneidensis HEPN toxin in complex with MNT antitoxin

Tamulaitiene, G., Sasnauskas, G., Songailiene, I., Juozapaitis, J., Siksnys, V.

(2020) Mol Cell 80: 955-970.e7

Released	2020-12-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Shewanella oneidensis MR-1
Macromolecule	Toxin-antitoxin system antidote Mnt family (protein) Toxin-antitoxin system toxin HepN family (protein)
Unique Ligands	AMP

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8BTN \| pdb_00008btn	Download File View File

Crystal structure of BcThsB

Tamulaitiene, G., Sabonis, D.

(2024) Nature 627: 431-436

Released	2024-02-21
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Bacillus cereus MSX-D12
Macromolecule	TIR domain-containing protein (protein)

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8BTO \| pdb_00008bto	Download File View File

Helical structure of BcThsA in complex with 1''-3'gcADPR

Tamulaitiene, G., Sasnauskas, G., Sabonis, D.

(2024) Nature 627: 431-436

Released	2024-02-21
Method	ELECTRON MICROSCOPY 2.96 Å
Organisms	Bacillus cereus MSX-D12
Macromolecule	NAD(+) hydrolase ThsA (protein)
Unique Ligands	NAD, OJC

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8BTP \| pdb_00008btp	Download File View File

Helical structure of BcThsA in complex with 1''-3'gc(etheno)ADPR

Tamulaitiene, G., Sasnauskas, G., Sabonis, D.

(2024) Nature 627: 431-436

Released	2024-02-21
Method	ELECTRON MICROSCOPY 2.75 Å
Organisms	Bacillus cereus MSX-D12
Macromolecule	NAD(+) hydrolase ThsA (protein)
Unique Ligands	ENA, RK3

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8OO8 \| pdb_00008oo8	Download File View File

Three-Dimensional Structure of Human Carbonic Anhydrase II in Complex with a Covalent Inhibitor

Leitans, J., Tars, K.

(2024) Elife 13:

Released	2024-04-10
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	VV8, ZN

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8PHB \| pdb_00008phb	Download File View File

Crystal structure of apo Cami1

Tamulaitiene, G., Tamulaitis, G., Mogila, I., Keda, K.

(2023) Science 382: 1036-1041

Released	2023-12-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Allochromatium vinosum
Macromolecule	CRISPR-associated protein, APE2256 family (protein)

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8PHJ \| pdb_00008phj	Download File View File

cA4-bound Cami1 in complex with 70S ribosome

Tamulaitiene, G., Mogila, I., Sasnauskas, G., Tamulaitis, G.

(2023) Science 382: 1036-1041

Released	2023-12-13
Method	ELECTRON MICROSCOPY 3.67 Å
Organisms	Allochromatium vinosum Escherichia coli Streptococcus thermophilus synthetic construct
Macromolecule	Unique protein chains: 53 Unique nucleic acid chains: 6
Unique Ligands	MG, ZN

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8S4F \| pdb_00008s4f	Download File View File

Human carbonic anhydrase I covalently bound to AV21-08

Manakova, E.N., Grazulis, S., Paketuryte-Latve, V., Vaskevicius, A., Smirnov, A.

(2024) Elife 13:

Released	2024-12-18
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 1 (protein)
Unique Ligands	ACY, DMS, EDO, PPI, TRS, VV8, ZN

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9EYI \| pdb_00009eyi	Download File View File

Cryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to A4p

Tamulaitiene, G., Sasnauskas, G., Smalakyte, D., Tamulaitis, G.

(2024) Mol Cell 84: 4239-4255.e8

Released	2024-10-02
Method	ELECTRON MICROSCOPY 2.75 Å
Organisms	Candidatus Cloacimonas acidaminovorans synthetic construct
Macromolecule	SMODS-associated and fused to various effectors domain-containing protein (protein) A4p (5'-R(APAPAPAP)-3') (nucleic acid)

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9EYJ \| pdb_00009eyj	Download File View File

Cryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to cA4

Tamulaitiene, G., Sasnauskas, G., Smalakyte, D., Tamulaitis, G.

(2024) Mol Cell 84: 4239-4255.e8

Released	2024-10-02
Method	ELECTRON MICROSCOPY 2.97 Å
Organisms	Candidatus Cloacimonas acidaminovorans synthetic construct
Macromolecule	SMODS-associated and fused to various effectors domain-containing protein (protein) cA4 (nucleic acid)

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9EYK \| pdb_00009eyk	Download File View File

Cryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to A4>p

Tamulaitiene, G., Sasnauskas, G., Smalakyte, D., Tamulaitis, G.

(2024) Mol Cell 84: 4239-4255.e8

Released	2024-10-02
Method	ELECTRON MICROSCOPY 2.84 Å
Organisms	Candidatus Cloacimonas acidaminovorans synthetic construct
Macromolecule	SMODS-associated and fused to various effectors domain-containing protein (protein) A4>p (5'-R(APAPAP(A23))-3') (nucleic acid)

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9FLF \| pdb_00009flf	Download File View File

Three-Dimensional Structure of Human Carbonic Anhydrase IX in Complex with a Covalent Inhibitor

Leitans, J., Tars, K.

(2024) Elife 13:

Released	2024-12-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase (protein)
Unique Ligands	A1IDV, ZN

1 to 16 of 16 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

7AE2 | pdb_00007ae2

Crystal structure of HEPN(H107A-Y109F) toxin in complex with MNT antitoxin

7AE6 | pdb_00007ae6

Crystal structure of di-AMPylated HEPN(R102A) toxin

7AE8 | pdb_00007ae8

Crystal structure of HEPN(R102A) toxin

7AE9 | pdb_00007ae9

Crystal structure of mono-AMPylated HEPN(R46E) toxin in complex with MNT antitoxin

7AER | pdb_00007aer

Rebuilt and re-refined PDB entry 5yep: tri-AMPylated Shewanella oneidensis HEPN toxin in complex with MNT antitoxin

8BTN | pdb_00008btn

Crystal structure of BcThsB

8BTO | pdb_00008bto

Helical structure of BcThsA in complex with 1''-3'gcADPR

8BTP | pdb_00008btp

Helical structure of BcThsA in complex with 1''-3'gc(etheno)ADPR

8OO8 | pdb_00008oo8

Three-Dimensional Structure of Human Carbonic Anhydrase II in Complex with a Covalent Inhibitor

8PHB | pdb_00008phb

Crystal structure of apo Cami1

8PHJ | pdb_00008phj

cA4-bound Cami1 in complex with 70S ribosome

8S4F | pdb_00008s4f

Human carbonic anhydrase I covalently bound to AV21-08

9EYI | pdb_00009eyi

Cryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to A4p

9EYJ | pdb_00009eyj

Cryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to cA4

9EYK | pdb_00009eyk

Cryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to A4>p

9FLF | pdb_00009flf

Three-Dimensional Structure of Human Carbonic Anhydrase IX in Complex with a Covalent Inhibitor

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

7AE2 | pdb_00007ae2

7AE6 | pdb_00007ae6

7AE8 | pdb_00007ae8

7AE9 | pdb_00007ae9

7AER | pdb_00007aer

8BTN | pdb_00008btn

8BTO | pdb_00008bto

8BTP | pdb_00008btp

8OO8 | pdb_00008oo8

8PHB | pdb_00008phb

8PHJ | pdb_00008phj

8S4F | pdb_00008s4f

9EYI | pdb_00009eyi

9EYJ | pdb_00009eyj

9EYK | pdb_00009eyk

9FLF | pdb_00009flf