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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sharma, S."

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Search Summary

This query matches 55 Structures.

Refinements

Structure Determination Methodology

experimental (55)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (15)
	Escherichia coli K-12 (11)
	Homo sapiens (8)
	Escherichia coli (5)
	Bacillus subtilis (3)
	Streptomyces sp. (3)
	Agrobacterium fabrum str. C58 (2)
	Yellowtail ascites virus - Y-6 (2)
	Aspergillus niger (1)
	Bacillus subtilis subsp. subtilis str. 168 (1)

More...

Taxonomy

	Bacteria (24)
	Riboviria (21)
	Eukaryota (10)

Experimental Method

	X-RAY DIFFRACTION (52)
	SOLUTION NMR (3)

Polymer Entity Type

Protein (55)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (18)
	2.0 - 2.5 (25)
	2.5 - 3.0 (8)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (6)
	2005 - 2009 (14)
	2010 - 2014 (19)
	2020 - 2024 (15)

Enzyme Classification Name

	Hydrolases (34)
	Transferases (2)

Membrane Protein Annotation

	mpstruc (10)
	OPM (8)

Symmetry Type

	Asymmetric (30)
	Cyclic (33)
	Dihedral (4)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (14)
	All alpha proteins (9)
	Artifacts (4)
	Multi-domain proteins (alpha and beta) (4)

AllSelected

1 to 25 of 55 Structures

Page 1 of 3

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1B12 \| pdb_00001b12	Download File View File

CRYSTAL STRUCTURE OF TYPE 1 SIGNAL PEPTIDASE FROM ESCHERICHIA COLI IN COMPLEX WITH A BETA-LACTAM INHIBITOR

Paetzel, M., Dalbey, R., Strynadka, N.C.J.

(1998) Nature 396: 186-190

Released	1999-12-10
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	SIGNAL PEPTIDASE I (protein)
Unique Ligands	1PN, PO4

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1ERM \| pdb_00001erm	Download File View File

X-RAY CRYSTAL STRUCTURE OF TEM-1 BETA LACTAMASE IN COMPLEX WITH A DESIGNED BORONIC ACID INHIBITOR (1R)-1-ACETAMIDO-2-(3-CARBOXYPHENYL)ETHANE BORONIC ACID

Ness, S., Martin, R., Kindler, A.M., Paetzel, M., Gold, M., Jones, J.B., Strynadka, N.C.J.

(2000) Biochemistry 39: 5312-5321

Released	2000-05-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	TEM-1 BETA-LACTAMASE (protein)
Unique Ligands	BJI

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1ERO \| pdb_00001ero	Download File View File

X-RAY CRYSTAL STRUCTURE OF TEM-1 BETA LACTAMASE IN COMPLEX WITH A DESIGNED BORONIC ACID INHIBITOR (1R)-2-PHENYLACETAMIDO-2-(3-CARBOXYPHENYL)ETHYL BORONIC ACID

Ness, S., Martin, R., Kindler, A.M., Paetzel, M., Gold, M., Jones, J.B., Strynadka, N.C.J.

(2000) Biochemistry 39: 5312-5321

Released	2000-05-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	TEM-1 BETA-LACTAMASE (protein)
Unique Ligands	BJP

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1ERQ \| pdb_00001erq	Download File View File

X-RAY CRYSTAL STRUCTURE OF TEM-1 BETA LACTAMASE IN COMPLEX WITH A DESIGNED BORONIC ACID INHIBITOR (1R)-1-ACETAMIDO-2-(3-CARBOXY-2-HYDROXYPHENYL)ETHYL BORONIC ACID

Ness, S., Martin, R., Kindler, A.M., Paetzel, M., Gold, M., Jones, J.B., Strynadka, N.C.J.

(2000) Biochemistry 39: 5312-5321

Released	2000-05-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	TEM-1 BETA-LACTAMASE (protein)
Unique Ligands	BJH

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1FOF \| pdb_00001fof	Download File View File

CRYSTAL STRUCTURE OF THE CLASS D BETA-LACTAMASE OXA-10

Paetzel, M., Danel, F., de Castro, L., Mosimann, S.C., Page, M.G.P., Strynadka, N.C.J.

(2000) Nat Struct Biol 7: 918-925

Released	2000-10-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA LACTAMASE OXA-10 (protein)
Unique Ligands	CO, SO4

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1KN9 \| pdb_00001kn9	Download File View File

CRYSTAL STRUCTURE OF A BACTERIAL SIGNAL PEPTIDASE APO-ENZYME, IMPLICATIONS FOR SIGNAL PEPTIDE BINDING AND THE SER-LYS DYAD MECHANISM.

Paetzel, M., Dalbey, R.E., Strynadka, N.C.J.

(2002) J Biological Chem 277: 9512-9519

Released	2002-01-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli K-12
Macromolecule	Signal peptidase I (protein)

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1T7D \| pdb_00001t7d	Download File View File

Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor

Paetzel, M., Goodall, J.J., Kania, M., Dalbey, R.E., Page, M.G.P.

(2004) J Biological Chem 279: 30781

Released	2004-07-13
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Escherichia coli Streptomyces sp.
Macromolecule	ARYLOMYCIN A2 (protein) SIGNAL PEPTIDASE I (protein)
Unique Ligands	M12

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2GEF \| pdb_00002gef	Download File View File

Crystal structure of a Novel viral protease with a serine/lysine catalytic dyad mechanism

Paetzel, M., Feldman, A.R., Lee, J., Delmas, B.

(2006) J Mol Biology 358: 1378-1389

Released	2006-05-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Blotched snakehead virus
Macromolecule	Protease VP4 (protein)

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2KXX \| pdb_00002kxx	Download File View File

NMR Structure of Escherichia coli BamE, a Lipoprotein Component of the beta-Barrel Assembly Machinery Complex

Kim, K., Okon, M., Escobar, E., Kang, H., McIntosh, L., Paetzel, M.

(2011) Biochemistry 50: 1081-1090

Released	2011-01-12
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Small protein A (protein)

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2MQ0 \| pdb_00002mq0	Download File View File

NMR structure of the c3 domain of human cardiac myosin binding protein-c

Zhang, X., De, S., Mcintosh, L.P., Paetzel, M.

(2014) Biochemistry 53: 5332-5342

Released	2014-07-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Myosin-binding protein C, cardiac-type (protein)

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2MQ3 \| pdb_00002mq3	Download File View File

NMR structure of the c3 domain of human cardiac myosin binding protein-c with a hypertrophic cardiomyopathy-related mutation R502W.

Zhang, X., De, S., Mcintosh, L.P., Paetzel, M.

(2014) Biochemistry 53: 5332-5342

Released	2014-07-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Myosin-binding protein C, cardiac-type (protein)

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2NZH \| pdb_00002nzh	Download File View File

Crystal structure of a secretion chaperone CsaA from Bacillus subtilis in the space group P 4 21 2

Shapova, Y.A., Paetzel, M.

(2007) Acta Crystallogr D Biol Crystallogr 63: 478-485

Released	2007-03-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	Protein csaA (protein)
Unique Ligands	GOL

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2NZO \| pdb_00002nzo	Download File View File

Crystal structure of a secretion chaperone CsaA from Bacillus subtilis in the space group P 32 2 1

Shapova, Y.A., Paetzel, M.

(2007) Acta Crystallogr D Biol Crystallogr 63: 478-485

Released	2007-03-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	Protein csaA (protein)
Unique Ligands	GOL

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2PNL \| pdb_00002pnl	Download File View File

Crystal structure of VP4 protease from infectious pancreatic necrosis virus (IPNV) in space group P1

Paetzel, M., Lee, J., Feldman, A.R., Delmas, B.

(2007) J Biological Chem 282: 24928-24937

Released	2007-06-05
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Infectious pancreatic necrosis virus
Macromolecule	Protease VP4 (protein)
Unique Ligands	GAI

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2PNM \| pdb_00002pnm	Download File View File

Crystal Structure of VP4 protease from infectious pancreatic necrosis virus (IPNV) in space group P6122

Paetzel, M., Lee, J., Feldman, A.R., Delmas, B.

(2007) J Biological Chem 282: 24928-24937

Released	2007-06-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Infectious pancreatic necrosis virus - Sp
Macromolecule	Protease VP4 (protein)

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2Q2H \| pdb_00002q2h	Download File View File

Crystal structure of the protein secretion chaperone CsaA from Agrobacterium tumefaciens with a genetically fused phage-display derived peptide substrate at the N-terminus.

Feldman, A.R., Shapova, Y.A., Paetzel, M.

(2008) J Mol Biology 379: 457-470

Released	2008-04-01
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Secretion chaperone, phage-display derived peptide (protein)
Unique Ligands	ACT, CIT

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2Q2I \| pdb_00002q2i	Download File View File

Crystal structure of the protein secretion chaperone CsaA from Agrobacterium tumefaciens.

Feldman, A.R., Shapova, Y.A., Paetzel, M.

(2008) J Mol Biology 379: 457-470

Released	2008-04-01
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Secretion chaperone (protein)
Unique Ligands	EDO, SO4

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3BEZ \| pdb_00003bez	Download File View File

Crystal structure of Escherichia coli Signal peptide peptidase (SppA), SeMet crystals

Paetzel, M.

(2008) J Mol Biology 376: 352-366

Released	2007-12-18
Method	X-RAY DIFFRACTION 2.76 Å
Organisms	Escherichia coli K-12
Macromolecule	Protease 4 (protein)

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3BF0 \| pdb_00003bf0	Download File View File

Crystal structure of Escherichia coli Signal peptide peptidase (SppA), Native crystals

Paetzel, M.

(2008) J Mol Biology 376: 352-366

Released	2007-12-18
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli
Macromolecule	Protease 4 (protein)

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3BLC \| pdb_00003blc	Download File View File

Crystal structure of the periplasmic domain of the Escherichia Coli YIDC

Paetzel, M., Oliver, D.C.

(2008) J Biological Chem 283: 5208-5216

Released	2007-12-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Inner membrane protein oxaA (protein)

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3EFP \| pdb_00003efp	Download File View File

Crystal structure of the Escherichia coli twin arginine leader peptide binding protein DmsD in a monomeric form

Stevens, C.M., Paetzel, M.

(2009) J Mol Biology 389: 124-133

Released	2009-04-07
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Escherichia coli K-12
Macromolecule	Twin-arginine leader-binding protein dmsD (protein)
Unique Ligands	CL, GOL, NA, TRS

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3EQA \| pdb_00003eqa	Download File View File

Catalytic domain of glucoamylase from aspergillus niger complexed with tris and glycerol

Lee, J., Paetzel, M.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 188-192

Released	2009-10-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aspergillus niger
Macromolecule	Glucoamylase (protein)
Unique Ligands	GOL, MAN, TRS
Unique branched monosaccharides	BMA, MAN, NAG

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3HL4 \| pdb_00003hl4	Download File View File

Crystal structure of a mammalian CTP:phosphocholine cytidylyltransferase with CDP-choline

Lee, J., Paetzel, M., Cornell, R.B.

(2009) J Biological Chem 284: 33535-33548

Released	2009-09-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rattus norvegicus
Macromolecule	Choline-phosphate cytidylyltransferase A (protein)
Unique Ligands	CDC, FMT, GOL

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3IIQ \| pdb_00003iiq	Download File View File

Crystallographic analysis of bacterial signal peptidase in ternary complex with Arylomycin A2 and a beta-sultam inhibitor

Paetzel, M.

(2009) Biochemistry 48: 8976

Released	2009-09-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12 Streptomyces sp.
Macromolecule	ARYLOMYCIN A2 (protein) SIGNAL PEPTIDASE I (protein)
Unique Ligands	CCN, GOL, JZA, M12, TRT