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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hafner, M."

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Homo sapiens (20)
	Mus musculus (2)
	Caenorhabditis elegans (1)

Taxonomy

Eukaryota (21)

Experimental Method

	X-RAY DIFFRACTION (15)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

	Protein (19)
	RNA (10)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (4)
	2.5 - 3.0 (5)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	2010 - 2014 (7)
	2020 - 2024 (14)

Enzyme Classification Name

	Transferases (4)
	Hydrolases (1)

Symmetry Type

	Asymmetric (18)
	Cyclic (1)

SCOP Classification

	All beta proteins (1)
	Alpha and beta proteins (a+b) (3)
	Artifacts (1)

AllSelected

1 to 21 of 21 Structures

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4EOW \| pdb_00004eow	Download File View File

Crystal structure of a disease-associated anti-human GM-CSF autoantibody MB007

Blech, M.

(2012) Biochem J 447: 205-215

Released	2012-08-22
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	MB007 IgG1 Fab fragment light chain (protein) MB007 human IgG1 Fab fragment heavy chain (protein)

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4G5Z \| pdb_00004g5z	Download File View File

Crystal structure of the therapeutical antibody fragment of canakinumab in its unbound state

Blech, M., Hoerer, S.

(2013) J Mol Biology 425: 94-111

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	canakinumab antibody fragment heavy chain (protein) canakinumab antibody fragment light chain (protein)

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4G6J \| pdb_00004g6j	Download File View File

Crystal structure of human IL-1beta in complex with the therapeutic antibody binding fragment of canakinumab

Blech, M., Hoerer, S.

(2013) J Mol Biology 425: 94-111

Released	2012-12-19
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-1 beta (protein) heavy chain of antibody binding fragment of canakinumab (protein) light chain of antibody binding fragment of canakinumab (protein)

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4G6K \| pdb_00004g6k	Download File View File

Crystal structure of the therapeutic antibody binding fragment of gevokizumab in its unbound state

Blech, M., Hoerer, S.

(2013) J Mol Biology 425: 94-111

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	heavy chain of gevokizumab antibody binding fragment (protein) light chain of gevokizumab antibody binding fragment (protein)

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4G6M \| pdb_00004g6m	Download File View File

Crystal structure of human IL-1beta in complex with therapeutic antibody binding fragment of gevokizumab

Blech, M., Hoerer, S.

(2013) J Mol Biology 425: 94-111

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Interleukin-1 beta (protein) heavy chain of gevokizumab antibody binding fragment (protein) light chain of gevokizumab antibody binding fragment (protein)

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4JVH \| pdb_00004jvh	Download File View File

Structure of the star domain of quaking protein in complex with RNA

Teplova, M., Hafner, M., Teplov, D., Essig, K., Tuschl, T., Patel, D.J.

(2013) Genes Dev 27: 928-940

Released	2013-05-08
Method	X-RAY DIFFRACTION 3.501 Å
Organisms	Homo sapiens
Macromolecule	Protein quaking (protein) RNA (5'-R(UPUPCPAPCPUPAPAPCPAP*A)-3') (nucleic acid)
Unique Ligands	SO4

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4JVY \| pdb_00004jvy	Download File View File

Structure of the STAR (signal transduction and activation of RNA) domain of GLD-1 bound to RNA

Teplova, M., Hafner, M., Teplov, D., Essig, K., Tuschl, T., Patel, D.J.

(2013) Genes Dev 27: 928-940

Released	2013-05-08
Method	X-RAY DIFFRACTION 2.853 Å
Organisms	Caenorhabditis elegans
Macromolecule	Female germline-specific tumor suppressor gld-1 (protein) RNA (5'-R(PCPUPAPAPCPAP*A)-3') (nucleic acid)

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6OQI \| pdb_00006oqi	Download File View File

CDK2 in complex with Cpd14 (5-fluoro-4-(4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl)-N-(5-(4-methylpiperazin-1-yl)pyridin-2-yl)pyrimidin-2-amine)

Murray, J.M.

(2019) Bioorg Med Chem Lett 29: 2294-2301

Released	2020-07-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinase 2 (protein)
Unique Ligands	N14

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6OQL \| pdb_00006oql	Download File View File

CDK6 in complex with Cpd13 (R)-5-fluoro-4-(4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl)-N-(5-(4-methylpiperazin-1-yl)pyridin-2-yl)pyrimidin-2-amine

Murray, J.M.

(2019) Bioorg Med Chem Lett 29: 2294-2301

Released	2020-07-29
Method	X-RAY DIFFRACTION 2.707 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinase 6 (protein)
Unique Ligands	N1A

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6OQO \| pdb_00006oqo	Download File View File

CDK6 in complex with Cpd24 N-(5-(6-ethyl-2,6-diazaspiro[3.3]heptan-2-yl)pyridin-2-yl)-5-fluoro-4-(4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl)pyrimidin-2-amine

Murray, J.M., Boenig, G.D.L.

(2019) Bioorg Med Chem Lett 29: 2294-2301

Released	2020-07-29
Method	X-RAY DIFFRACTION 1.977 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinase 6 (protein)
Unique Ligands	N1J

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7TYP \| pdb_00007typ	Download File View File

TEAD2 bound to GNE-7883

Noland, C.L., Fong, R.

To be published

Released	2023-05-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional enhancer factor TEF-4 (protein)
Unique Ligands	KUR, TRS

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7TYQ \| pdb_00007tyq	Download File View File

TEAD2 bound to Compound 1

Noland, C.L., Fong, R.

To be published

Released	2023-05-03
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional enhancer factor TEF-4 (protein)
Unique Ligands	KUI

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7TYU \| pdb_00007tyu	Download File View File

TEAD2 bound to Compound 2

Noland, C.L., Fong, R.

To be published

Released	2023-05-03
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional enhancer factor TEF-4 (protein)
Unique Ligands	KTF, TRS

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8QRK \| pdb_00008qrk	Download File View File

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1

Valentin Gese, G., Cipullo, M., Rorbach, J., Hallberg, B.M.

(2024) Nat Commun 15: 5664-5664

Released	2024-06-26
Method	ELECTRON MICROSCOPY 6.69 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 1
Unique Ligands	ATP, FES, GNP, K, MG, NAD, SPM, SRY, ZN

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8QRL \| pdb_00008qrl	Download File View File

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2

Valentin Gese, G., Cipullo, M., Rorbach, J., Hallberg, B.M.

(2024) Nat Commun 15: 5664-5664

Released	2024-06-26
Method	ELECTRON MICROSCOPY 3.34 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 1
Unique Ligands	ATP, FES, GDP, K, MG, NAD, SAH, ZN

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8QRM \| pdb_00008qrm	Download File View File

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3

Valentin Gese, G., Cipullo, M., Rorbach, J., Hallberg, B.M.

(2024) Nat Commun 15: 5664-5664

Released	2024-06-26
Method	ELECTRON MICROSCOPY 3.05 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 31 Unique nucleic acid chains: 1
Unique Ligands	ATP, FES, GNP, K, MG, NAD, SPM, SRY, ZN

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8QRN \| pdb_00008qrn	Download File View File

mt-SSU in GTPBP8 knock-out cells, state 4

Valentin Gese, G., Cipullo, M., Rorbach, J., Hallberg, B.M.

(2024) Nat Commun 15: 5664-5664

Released	2024-06-26
Method	ELECTRON MICROSCOPY 2.98 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 31 Unique nucleic acid chains: 3
Unique Ligands	ATP, FES, FME, GNP, GTP, K, MG, NAD, SPM, SRY, ZN

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8QU1 \| pdb_00008qu1	Download File View File

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1

Valentin Gese, G., Cipullo, M., Rorbach, J., Hallberg, B.M.

(2024) Nat Commun 15: 5664-5664

Released	2024-06-26
Method	ELECTRON MICROSCOPY 2.74 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 2

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8QU5 \| pdb_00008qu5	Download File View File

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2

Valentin Gese, G., Cipullo, M., Rorbach, J., Hallberg, B.M.

(2024) Nat Commun 15: 5664-5664

Released	2024-06-26
Method	ELECTRON MICROSCOPY 2.42 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 53 Unique nucleic acid chains: 2
Unique Ligands	MG, PNS, ZN